View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_138 (Length: 274)
Name: NF9917A_low_138
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 48399477 - 48399717
Alignment:
| Q |
20 |
ctccaaacaatcaaatttgagtttttacctcaacttattttgcctagatggaatcgacttgtaacctcaagttttaccattttgatcttttatttgaaat |
119 |
Q |
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| T |
48399477 |
ctccaagcaatcaaatttgagtttttacctcaacttattttgcctagatggaatcgacttgtaacctcaagttttaccattttgatcttttatttgaaat |
48399576 |
T |
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| Q |
120 |
tatggttaaattatttaactaatgatattttaaagtcttatatgttatgtcatnnnnnnngtcgtttcaaacacgaaacatgaacttttatataaaagga |
219 |
Q |
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| T |
48399577 |
tatggttaaattatttaactaatgatattttaaagtcttatatgttatgtcataaaaaaagtcgtttcaaacacgaaacatgaacttttatataaaagga |
48399676 |
T |
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| Q |
220 |
aaagaaaagaagggaccaaaattgaaaccagaaaatttata |
260 |
Q |
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| T |
48399677 |
aaagaaaagaagagaccaaaattgaaatcagaaaatttata |
48399717 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 42111640 - 42111604
Alignment:
| Q |
124 |
gttaaattatttaactaatgatattttaaagtcttat |
160 |
Q |
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| T |
42111640 |
gttaaattattaaactaatgatattttaaagtcttat |
42111604 |
T |
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