View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_139 (Length: 274)
Name: NF9917A_low_139
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_139 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 29104368 - 29104100
Alignment:
| Q |
1 |
gccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgtt |
100 |
Q |
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| T |
29104368 |
gccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaacagcagtcgtt |
29104269 |
T |
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| Q |
101 |
aaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcag |
200 |
Q |
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| T |
29104268 |
aaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcag |
29104169 |
T |
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| Q |
201 |
cggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatt |
269 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29104168 |
cggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagatt |
29104100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 29090106 - 29089856
Alignment:
| Q |
2 |
ccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgtta |
101 |
Q |
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|||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||||||| | | |||| |
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| T |
29090106 |
ccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgtta |
29090007 |
T |
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| Q |
102 |
aatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagc |
201 |
Q |
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||||||||||||||||||| ||||| || | | || | |||| ||||| || | | ||||| ||||| |||| ||||||| ||||||||||| |
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| T |
29090006 |
aatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgct |
29089907 |
T |
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| Q |
202 |
ggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatct |
252 |
Q |
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||| ||||||||||| |||||||||| |||| | |||||||||| ||||| |
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| T |
29089906 |
ggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatct |
29089856 |
T |
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