View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_14 (Length: 438)

Name: NF9917A_low_14
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_14
NF9917A_low_14
[»] chr1 (3 HSPs)
chr1 (9-416)||(3908462-3908872)
chr1 (328-416)||(22964034-22964122)
chr1 (372-416)||(15700748-15700792)
[»] chr6 (5 HSPs)
chr6 (312-416)||(21762049-21762151)
chr6 (334-416)||(826693-826775)
chr6 (312-404)||(30836422-30836512)
chr6 (340-404)||(31442556-31442620)
chr6 (356-400)||(20915980-20916024)
[»] chr4 (3 HSPs)
chr4 (312-416)||(9451269-9451371)
chr4 (371-404)||(24257742-24257775)
chr4 (340-400)||(9201332-9201392)
[»] chr3 (7 HSPs)
chr3 (312-416)||(52041325-52041427)
chr3 (334-416)||(22424331-22424413)
chr3 (334-404)||(39484769-39484839)
chr3 (312-416)||(42655800-42655902)
chr3 (356-404)||(11582613-11582661)
chr3 (334-401)||(1141786-1141853)
chr3 (334-416)||(1529192-1529275)
[»] chr2 (5 HSPs)
chr2 (312-416)||(29280112-29280214)
chr2 (328-413)||(38955795-38955880)
chr2 (334-404)||(38996481-38996551)
chr2 (372-416)||(32281513-32281557)
chr2 (354-404)||(22625368-22625418)
[»] chr8 (4 HSPs)
chr8 (340-404)||(26981074-26981138)
chr8 (325-400)||(3193127-3193201)
chr8 (340-404)||(5334312-5334376)
chr8 (340-404)||(26083942-26084006)
[»] chr5 (3 HSPs)
chr5 (340-404)||(9045162-9045226)
chr5 (325-402)||(31981834-31981910)
chr5 (340-400)||(6697978-6698038)
[»] chr7 (2 HSPs)
chr7 (340-404)||(4407816-4407880)
chr7 (340-404)||(20077309-20077373)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 416
Target Start/End: Original strand, 3908462 - 3908872
Alignment:
Q  9 aatgaatggaaactaacatacctgtcaagcaacgataggaaagaactgtttcaacatcacagtcagccatggttgaactaagaggtgtaacaaatgtaaa 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3908462 aatgaatggaaactaacatacctgtcaagcaacaataggaaagaactgtttcaacatcacagtcagccatggttgaactaagaggtgtaacaaatgtaaa 3908561  T
Q  109 gtgtgaaggaaattggtaaatgaagttgctaacattacacgcatannnnnnngagggaacatgtatatatacatgggaaaaagagggtagttattaatta 208  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| |||||||||||||||||||    
T  3908562 gtgtgaaggaaattggtaaatgaagttgctaacataacacacatatttttttgagggaacatgtatatatacatgggaaatagagggtagttattaatta 3908661  T
Q  209 tttaatttgcatagaatatatcaaggtaaaagttgggactataaattggcgtgggattggaaaaggcaaaggaaattgaacttatagc---ttcnnnnnn 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||           
T  3908662 tttaatttgcatagaatatatcaaggtaaaagttgggactataaattggcgtgggattagaaaaggcaaaggaaattgaacttatagcttttttttattt 3908761  T
Q  306 nnaaggaaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggtt 405  Q
      |||||||||||||||||||| |||  || ||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  3908762 tgaaggaaaattgaacttatagtttgttgactaagaaaagtactaacgaaaattaaatgtttggatgatgaagggaaaatagtaggttaaaattagggtt 3908861  T
Q  406 accaatagctt 416  Q
    |||||||||||    
T  3908862 accaatagctt 3908872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 22964122 - 22964034
Alignment:
Q  328 cttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaatagctt 416  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||| ||||||| |||||||||||||||||||||    
T  22964122 cttgctgagtaggaaaagcactaacaaaaattaaatgcttggttgatggagggaaaatattaggttagaattagggttaccaatagctt 22964034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 15700792 - 15700748
Alignment:
Q  372 gatggaggaaaaatagtaggttaaaattagggttaccaatagctt 416  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||    
T  15700792 gatggagggaaaatactaggttaaaattagggttactaatagctt 15700748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 21762151 - 21762049
Alignment:
Q  312 aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaat 411  Q
    |||||||||||||  |||||  ||||| ||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||| | ||||    
T  21762151 aaaattgaactta--gcttgatgagtaggaaaagcactaacgaaaattaaataattgggtgatggagggaaaatagtaggttaaaattagggtgagcaat 21762054  T
Q  412 agctt 416  Q
    |||||    
T  21762053 agctt 21762049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 826693 - 826775
Alignment:
Q  334 gagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaatagctt 416  Q
    ||||| ||||||||||||||||||||||||| ||||  |||||||| |||||| ||||||||||||| ||| | |||||||||    
T  826693 gagtaggaaaagcactaacgaaaattaaatgattgggcgatggagggaaaatattaggttaaaattaaggtgaacaatagctt 826775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 404
Target Start/End: Original strand, 30836422 - 30836512
Alignment:
Q  312 aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||||||||||||  |||||| ||||| | |||||||| | |||||||||||| ||||  |||||||| |||||| ||| |||||||||||||    
T  30836422 aaaattgaactta--gcttgctgagtagggaaagcactcatgaaaattaaatgcttgggggatggagggaaaatattagattaaaattagggt 30836512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 31442620 - 31442556
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||||||||| | || |||| |||| |||||||||||||| |||||| |||||||||||||||||    
T  31442620 gaaaagcacttaggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggt 31442556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 20915980 - 20916024
Alignment:
Q  356 aattaaatgtttggatgatggaggaaaaatagtaggttaaaatta 400  Q
    |||| |||| |||||||||||||| |||||| |||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaatta 20916024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 9451371 - 9451269
Alignment:
Q  312 aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaat 411  Q
    |||||||||||||  |||||  ||||| ||||||||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||| | ||||    
T  9451371 aaaattgaactta--gcttgatgagtacgaaaagcactaacgaaaattaaatgcttgggtgatggagggaaaatattaggttaaaattagggtgaacaat 9451274  T
Q  412 agctt 416  Q
    |||||    
T  9451273 agctt 9451269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 24257775 - 24257742
Alignment:
Q  371 tgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||||||||||||||| |||||||||||||||||    
T  24257775 tgatggaggaaaaatattaggttaaaattagggt 24257742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 9201392 - 9201332
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaatta 400  Q
    |||||| ||||| || |||| |||| ||||||||||| || |||||| |||||||||||||    
T  9201392 gaaaagaactaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 52041325 - 52041427
Alignment:
Q  312 aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaat 411  Q
    |||||||||||||  |||||  ||||| ||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||||||||||| | ||||    
T  52041325 aaaattgaactta--gcttgatgagtaggaaaagcactaaccaaaattaaatgcttgggtgatggaaggaaaatattaggttaaaattagggtgaacaat 52041422  T
Q  412 agctt 416  Q
    |||||    
T  52041423 agctt 52041427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 22424331 - 22424413
Alignment:
Q  334 gagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaatagctt 416  Q
    ||||| |||||| |||||| |||||||||||||| | ||||||||| |||||| ||||||||||||||||| | |||||||||    
T  22424331 gagtaggaaaagtactaacaaaaattaaatgtttaggtgatggagggaaaatattaggttaaaattagggtgaacaatagctt 22424413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 39484769 - 39484839
Alignment:
Q  334 gagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    ||||| |||||||| |||  |||||||||||||||| ||||||||| |||||| |||||||||| ||||||    
T  39484769 gagtaggaaaagcattaattaaaattaaatgtttgggtgatggagggaaaatattaggttaaaactagggt 39484839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 42655902 - 42655800
Alignment:
Q  312 aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaat 411  Q
    |||||||||||||  |||||  ||||| ||||| ||||||  ||||||||||| |||| ||||| ||| |||||| || |||||||||||||| | ||||    
T  42655902 aaaattgaactta--gcttgatgagtaggaaaaacactaatcaaaattaaatgcttgggtgatgaagggaaaatattatgttaaaattagggtgaacaat 42655805  T
Q  412 agctt 416  Q
    |||||    
T  42655804 agctt 42655800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 11582661 - 11582613
Alignment:
Q  356 aattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||||||||    
T  11582661 aatttaatgtttggatgacggagggaaaatattaggttaaaattagggt 11582613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 1141853 - 1141786
Alignment:
Q  334 gagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattag 401  Q
    ||||| ||||| |||||| |||||||||||| ||||  |||||||| |||||| ||| ||||||||||    
T  1141853 gagtaggaaaaacactaatgaaaattaaatgcttgggggatggagggaaaatattagattaaaattag 1141786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 1529275 - 1529192
Alignment:
Q  334 gagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaa-aattagggttaccaatagctt 416  Q
    ||||| ||||| || |||||| |||||| || ||| |||||||||| |||| | |||||||| |||||||||||| ||||||||    
T  1529275 gagtaggaaaaacattaacgagaattaattgcttgtatgatggagggaaaaaattaggttaagaattagggttactaatagctt 1529192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 29280214 - 29280112
Alignment:
Q  312 aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaat 411  Q
    |||||||||||||  |||||  ||||| ||||||||||||||||||||| ||| || | |||| |||| |||||| ||||||||||||||||| | ||||    
T  29280214 aaaattgaactta--gcttgatgagtacgaaaagcactaacgaaaattacatgcttaggtgattgagggaaaatattaggttaaaattagggtgaacaat 29280117  T
Q  412 agctt 416  Q
    |||||    
T  29280116 agctt 29280112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 38955795 - 38955880
Alignment:
Q  328 cttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggttaccaatag 413  Q
    ||||| ||||| |||||||| |||| ||||||||||| |||| ||||||||| |||||| ||||||| ||||||||||| ||||||    
T  38955795 cttgctgagtaggaaaagcattaacaaaaattaaatgcttgggtgatggagggaaaatattaggttagaattagggttatcaatag 38955880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 38996481 - 38996551
Alignment:
Q  334 gagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    ||||| ||||| ||||||  | |||||||||||||  ||||||||| |||||| |||||||||||||||||    
T  38996481 gagtaggaaaaacactaagcagaattaaatgtttgtttgatggagggaaaatattaggttaaaattagggt 38996551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 32281557 - 32281513
Alignment:
Q  372 gatggaggaaaaatagtaggttaaaattagggttaccaatagctt 416  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||    
T  32281557 gatggagggaaaatactaggttaaaattagggttactaatagctt 32281513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 22625368 - 22625418
Alignment:
Q  354 aaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    ||||||||||| | || ||||||||| |||||| |||||||||||||||||    
T  22625368 aaaattaaatgatggggtgatggagggaaaatattaggttaaaattagggt 22625418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 26981138 - 26981074
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    ||||| |||||| || |||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  26981138 gaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggt 26981074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 3193127 - 3193201
Alignment:
Q  325 tagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaatta 400  Q
    |||||||| ||||| |||||||||| | |||||||||||||||||   ||||||| |||||| |||||||||||||    
T  3193127 tagcttgctgagtaggaaaagcactcatgaaaattaaatgtttgg-gaatggagggaaaatattaggttaaaatta 3193201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 5334376 - 5334312
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||||||| ||| || |||| |||| |||||||||||||| |||||  |||||||||||||||||    
T  5334376 gaaaagcattaaagagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggt 5334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 26084006 - 26083942
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    ||||||||||||  | |||| |||| || ||||||||||| |||||| |||||||||||||||||    
T  26084006 gaaaagcactaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggt 26083942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 9045226 - 9045162
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||||||||||| || |||| ||||||| ||||||||||| |||||| |||||||||||||||||    
T  9045226 gaaaagcactaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggt 9045162  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 31981910 - 31981834
Alignment:
Q  325 tagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagg 402  Q
    |||||||| ||||| |||||||||| | |||||||||||| || || |||| ||| |||||| |||||||||||||||    
T  31981910 tagcttgctgagtaggaaaagcactcatgaaaattaaatgctt-gaggatgtagggaaaatattaggttaaaattagg 31981834  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 6698038 - 6697978
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaatta 400  Q
    |||||||||| | || |||| |||| ||| |||||||||| |||||| |||||||||||||    
T  6698038 gaaaagcactcaagagaatttaatgcttgcatgatggagggaaaatattaggttaaaatta 6697978  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 4407880 - 4407816
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    ||||| |||||| || |||| ||||||||| ||||||||| |||||| |||||||||||||||||    
T  4407880 gaaaaacactaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggt 4407816  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 20077309 - 20077373
Alignment:
Q  340 gaaaagcactaacgaaaattaaatgtttggatgatggaggaaaaatagtaggttaaaattagggt 404  Q
    |||||||||||| |  |||| |||| |||||||||||||| |||||| |||||||||||||||||    
T  20077309 gaaaagcactaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggt 20077373  T

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