View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_141 (Length: 273)
Name: NF9917A_low_141
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_141 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 29007616 - 29007362
Alignment:
| Q |
13 |
atacaaccaaatttgaaagtgtaaacagaaacactaaaacacgtgtattacacgattgattaactaacttcaaatgaactaccttagaatggacacaaaa |
112 |
Q |
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| T |
29007616 |
atacaaccaaatttgaaagtgtaaacagaaacactaaaacacgtgtattacacgattgattaactaacttcaaatgaactacctcagaatggacataaaa |
29007517 |
T |
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| Q |
113 |
tcaaatttatcttaattttaaaaaagcataatagaatctaaccttccaagattgttgaccattgtaagcataaacaaaacgagctctcttaacatcttca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007516 |
tcaaatttatcttaattttaaaaaagcataatagaatctaaccttccaagattgttgaccattgtaagcataaacaaaacgagctctcttaacatcttca |
29007417 |
T |
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| Q |
213 |
aacacgttcttgttctcaccttcacaaaggaaatacacagttgaagtcactttta |
267 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29007416 |
aacacgttcttgttctccccttcacaaaggaaatacacagttgaagtcactttta |
29007362 |
T |
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