View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_147 (Length: 268)
Name: NF9917A_low_147
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_147 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 39625720 - 39625528
Alignment:
| Q |
13 |
aatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttat |
111 |
Q |
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| T |
39625720 |
aatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttat |
39625621 |
T |
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| Q |
112 |
tcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagaga |
209 |
Q |
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| T |
39625620 |
tcatcaaaattagtattagcttac-----aaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagaga |
39625528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 39635270 - 39635078
Alignment:
| Q |
13 |
aatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttat |
111 |
Q |
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| T |
39635270 |
aatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttat |
39635171 |
T |
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| Q |
112 |
tcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagaga |
209 |
Q |
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| T |
39635170 |
tcatcaaaattagtattagcttac-----aaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagaga |
39635078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 39625432 - 39625478
Alignment:
| Q |
222 |
caaatactaccatccaactctttgcaataccctttcgtttacttcct |
268 |
Q |
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| T |
39625432 |
caaatactaccatccaactctttgcaatacccttttgtttacttcct |
39625478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 39634982 - 39635028
Alignment:
| Q |
222 |
caaatactaccatccaactctttgcaataccctttcgtttacttcct |
268 |
Q |
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| T |
39634982 |
caaatactaccatccaactctttgcaatacccttttgtttacttcct |
39635028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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