View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_154 (Length: 265)
Name: NF9917A_low_154
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_154 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34945180 - 34945442
Alignment:
| Q |
1 |
gtcacttgagttaaatataagtggctcctttattacagtccccttataaatatatttgaagcaaaaatacaattatttattaaattacagcaaggtttaa |
100 |
Q |
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| T |
34945180 |
gtcacttgagttaaatataagtggctcctttattacagtccccttataaatatatttgaagcaaaaatacaattatttattaaattacagcaaggtttaa |
34945279 |
T |
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| Q |
101 |
ggatagagctcaataagagacctaaaaccaaatgtgaggaagatcttgtaatatttgaagccagcttgtaagaaaagttgtttccattccttttcatttc |
200 |
Q |
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| T |
34945280 |
ggatagagctcaataagagacctaaaaccaaatgtgaggaagatcttgtaatatttgaagccagcttgtaagaaaagttgtttccattctttttcatttc |
34945379 |
T |
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| Q |
201 |
tctcttttccattgaaacaggtcatcataaccacatcaagcaaaagctttacttctgtcattt |
263 |
Q |
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| T |
34945380 |
tctcttttccattgaaacaggtcatcataaccacatcaagcaaaagctttacttctgtcattt |
34945442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 34949638 - 34949842
Alignment:
| Q |
59 |
aagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaaccaaatgtgaggaagatcttgtaatatttga |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
34949638 |
aagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaaccaaacgtggggaagatcttgtagtatttga |
34949737 |
T |
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| Q |
159 |
agccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgaaacaggtcatcataaccacatcaagcaaaagctttacttctgt |
258 |
Q |
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| T |
34949738 |
agccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgagactggtcatcataaccacatcaagtaaaagctttacttctgt |
34949837 |
T |
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| Q |
259 |
cattt |
263 |
Q |
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| T |
34949838 |
cattt |
34949842 |
T |
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