View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_155 (Length: 264)

Name: NF9917A_low_155
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_155
NF9917A_low_155
[»] chr4 (15 HSPs)
chr4 (1-253)||(27445960-27446212)
chr4 (1-253)||(27556454-27556722)
chr4 (145-253)||(27559315-27559423)
chr4 (172-253)||(27502882-27502963)
chr4 (105-224)||(27500442-27500558)
chr4 (166-253)||(27424589-27424676)
chr4 (105-227)||(27526213-27526332)
chr4 (165-228)||(27419171-27419234)
chr4 (165-228)||(27422035-27422098)
chr4 (172-227)||(27479885-27479940)
chr4 (165-228)||(27571600-27571663)
chr4 (165-227)||(27414405-27414467)
chr4 (107-149)||(27563543-27563585)
chr4 (172-253)||(17970283-17970364)
chr4 (172-229)||(27513875-27513932)
[»] chr3 (12 HSPs)
chr3 (166-243)||(50913474-50913551)
chr3 (166-210)||(38035033-38035077)
chr3 (166-211)||(38032260-38032305)
chr3 (166-211)||(38038525-38038570)
chr3 (172-224)||(55084770-55084822)
chr3 (166-213)||(38041918-38041965)
chr3 (172-221)||(38024982-38025031)
chr3 (166-211)||(38027433-38027478)
chr3 (172-221)||(38028873-38028922)
chr3 (172-221)||(38031434-38031483)
chr3 (172-221)||(38040188-38040237)
chr3 (172-224)||(50911973-50912025)
[»] chr8 (2 HSPs)
chr8 (166-211)||(21608235-21608280)
chr8 (172-221)||(21607403-21607452)
[»] chr2 (1 HSPs)
chr2 (172-253)||(3073553-3073634)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 27445960 - 27446212
Alignment:
Q  1 ttatgactatctcaagcagcaacacaattcaagttactcacaaatacaaattcaaatatttctttcttacatacacaagctgttagtgtgttgtaactca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27445960 ttatgactatctcaagcagcaacacaattcaagttactcacaaatacaaattaaaatatttctttcttacatacacaagatgttagtgtgttgtaactca 27446059  T
Q  101 taataacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttgg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27446060 taataacaatgggctttcgtttacctggtatcattagacggtcatcatcttccaaggctgtggatgaagtcccaaaaggctatcttgcggtttatgttgg 27446159  T
Q  201 agagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 253  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446160 agaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 27446212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27556722 - 27556454
Alignment:
Q  1 ttatgactatctcaagcagcaacacaattcaagttactcacaaa-tacaaattcaaatatttctttcttacatacacaagctgtt------------agt 87  Q
    |||||||  ||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||            |||    
T  27556722 ttatgacattcttaagcagcaatacaattcaagtcactcacaaaatacaaattcaaatatttctttctttcatacaaaagctgttgtattcattgttagt 27556623  T
Q  88 gtgttgtaactcataataa----caat--gggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggct 181  Q
    |||||| ||||||||||||    ||||  ||| |||| ||||||||||||   |||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  27556622 gtgttgcaactcataataattaacaatatgggttttcacttacctggtat---tagaaggtcatcctcttccaaggctgtggatgaagtcccaaaaggct 27556526  T
Q  182 atcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 253  Q
    |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  27556525 atctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcat 27556454  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 27559423 - 27559315
Alignment:
Q  145 tcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatc 244  Q
    |||||||||||| ||||| ||| | |||||||||||||||| || |||||||||||||| ||||||||| ||||| ||||||| | ||||||||||||||    
T  27559423 tcatcttccaagactgtggatggaatcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatc 27559324  T
Q  245 aaccttcat 253  Q
    || ||||||    
T  27559323 aatcttcat 27559315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 27502963 - 27502882
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 253  Q
    |||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||  ||||  ||||||||| ||||||    
T  27502963 ccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcat 27502882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 27500558 - 27500442
Alignment:
Q  105 aacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagag 204  Q
    ||||||||| ||||| |||||| ||||||| | | ||||||||||||| ||  |||||   || || |||||||| ||||| || || || || ||||||    
T  27500558 aacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaatctgtg---gacgtaccaaaaggatatctagcagtgtacgtaggagag 27500462  T
Q  205 aaaatgaagcgatttgtgat 224  Q
    ||||||||||||||||||||    
T  27500461 aaaatgaagcgatttgtgat 27500442  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 27424676 - 27424589
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 253  Q
    |||||||||||||||||||| || || |||||||||||  |||||| ||| ||||||||||||   ||||  ||||| ||||||||||    
T  27424676 gaagtcccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcat 27424589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 27526332 - 27526213
Alignment:
Q  105 aacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagag 204  Q
    ||||||||| ||||| |||||| ||||||| | | || |||||||||| || | |||  |||   | ||||| || ||||| || || ||||||||||||    
T  27526332 aacaatgggttttcgtttacctagtatcatcaaaagggcatcatcttcaaaaggtgtcgatg---ttccaaagggatatctagcagtgtatgttggagag 27526236  T
Q  205 aaaatgaagcgatttgtgattcc 227  Q
    ||||||||||| |||||||||||    
T  27526235 aaaatgaagcggtttgtgattcc 27526213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 27419234 - 27419171
Alignment:
Q  165 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 228  Q
    ||||||||||||||||||||| || || ||||||||||| | ||||| ||| || |||||||||    
T  27419234 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattcca 27419171  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 27422098 - 27422035
Alignment:
Q  165 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 228  Q
    ||||||||||||||||||||| || || ||||||||||| | |||||| || || |||||||||    
T  27422098 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattcca 27422035  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 27479885 - 27479940
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcc 227  Q
    |||||||||||||| || || || || ||||||||||||||||| |||||||||||    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcc 27479940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 27571600 - 27571663
Alignment:
Q  165 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 228  Q
    ||||||||||||||||||||| || || ||||||||||| | ||||| ||| || |||||||||    
T  27571600 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattcca 27571663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 27414467 - 27414405
Alignment:
Q  165 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcc 227  Q
    |||||| ||||||||||||||||| || || |||||||| |||||||  || |||||||||||    
T  27414467 tgaagtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcc 27414405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 27563585 - 27563543
Alignment:
Q  107 caatgggctttcgcttacctggtatcattagacggtcatcatc 149  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||    
T  27563585 caatgggttttcgtttacctggtatcattagaaggtcatcatc 27563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 17970283 - 17970364
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 253  Q
    ||||| || ||||||||||| || ||||||||| |||||||||| |||||||| || || ||||  ||||| ||| ||||||    
T  17970283 ccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcat 17970364  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 27513932 - 27513875
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaa 229  Q
    |||||||| ||||| || || ||||| ||||||||||||||||| |||||||| ||||    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaa 27513875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 50913474 - 50913551
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaat 243  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| | ||  |||||||||  ||||| ||||||    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaat 50913551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 38035033 - 38035077
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatg 210  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatg 38035077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 38032260 - 38032305
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 211  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 38032305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 38038525 - 38038570
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 211  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatga 38038570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 55084770 - 55084822
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgat 224  Q
    |||||||| | |||||| || ||||||||||||||||||||||| ||||||||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgat 55084822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 38041918 - 38041965
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaag 213  Q
    |||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  38041918 gaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaag 38041965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38025031 - 38024982
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 221  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgt 38024982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 38027433 - 38027478
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 211  Q
    ||||| ||||||||| ||||||| || |||||||||||||||||||    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatga 38027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38028922 - 38028873
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 221  Q
    ||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  38028922 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 38028873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38031483 - 38031434
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 221  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgt 38031434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38040237 - 38040188
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 221  Q
    ||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  38040237 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 38040188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 50912025 - 50911973
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgat 224  Q
    ||||| |||||||||||||| ||||||||||| || ||||| || ||||||||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgat 50911973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 21608235 - 21608280
Alignment:
Q  166 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 211  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 21608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 21607452 - 21607403
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 221  Q
    ||||| || ||||||||||| |||||||||||| |||||||||| |||||    
T  21607452 ccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgt 21607403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 3073553 - 3073634
Alignment:
Q  172 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 253  Q
    ||||| || ||||||||||| || ||||||||| |||||||||| |||||||| || || ||||  ||||| ||| ||||||    
T  3073553 ccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcat 3073634  T

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