View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_168 (Length: 256)
Name: NF9917A_low_168
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_168 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 26872110 - 26871862
Alignment:
| Q |
7 |
ttactgtggtagcctaaagagaaaaatgtttctccttcacttttcttagtctcttacattcactactgtccaagagtagttcttaacaaaccatgttata |
106 |
Q |
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| T |
26872110 |
ttactgtggtagcctaaagagaaaaatgtttctccttcacttttcttagtctcttacattcactactgtccaagagtagttcttaacaaaccatgttata |
26872011 |
T |
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| Q |
107 |
tttctaaatgatatcacttcaagttctctaaatgcaatatctgctacctgcacccttttcttcactaagatagatttgtgtgagcgtgtgtagtgtgtgt |
206 |
Q |
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| T |
26872010 |
tttccaaatgatatcacttcaagttgtctaaatgcaatatctgctacctgcacccttttcttcact-cgatagatttgtgtgagcgtgtgtagtgtgtgt |
26871912 |
T |
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| Q |
207 |
aatttccacatacctgaatatgtaatgatgcgtgtatcgatttttaacag |
256 |
Q |
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| T |
26871911 |
aatttccacgtacctgaatatgtaatgatgcatgtatctatttttaacag |
26871862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 26871826 - 26871771
Alignment:
| Q |
201 |
gtgtgtaatttccacatacctgaatatgtaatgatgcgtgtatcgatttttaacag |
256 |
Q |
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| T |
26871826 |
gtgtgtaatttccacgtacctgagtatgtaatgatgcatgtatctatttttaacag |
26871771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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