View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_176 (Length: 253)
Name: NF9917A_low_176
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_176 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 10083297 - 10083425
Alignment:
| Q |
9 |
gagatgaacaataaatttgagatcgcatttggagacaaaaactataaaattagactttaggttataatcaactctagtcgttaatttaattataattgtt |
108 |
Q |
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| T |
10083297 |
gagatgaacaataaatttgagatcgcatttggagacaaaaactataaaattagactttaggttataatcaactctagtcgttaatttaattataattgtt |
10083396 |
T |
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| Q |
109 |
ctcgccaaaacatatgaaaattaaatata |
137 |
Q |
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| T |
10083397 |
ctcgccaaaacatatgaaaatcaaatata |
10083425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 10083541 - 10083580
Alignment:
| Q |
204 |
cgtgtttattagctaattgtatataggttggagtatctct |
243 |
Q |
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| T |
10083541 |
cgtgtttattagctaattgtatataggttggagtatctct |
10083580 |
T |
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