View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_177 (Length: 253)
Name: NF9917A_low_177
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_177 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 43777256 - 43777452
Alignment:
| Q |
47 |
aagaaaacttggatctatttagctactatatgtgacgttaacg--tatctttttcaactagagcaacaatatatcattattatagaaaagatagttaaag |
144 |
Q |
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| T |
43777256 |
aagaaaacttggatctatttagctactatatgtgacgttaactcttatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag |
43777355 |
T |
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| Q |
145 |
agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgcatattgttttgttaaagactcttatatattgttatagataatatt |
241 |
Q |
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| T |
43777356 |
agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgtatattgttttgttaaagactcttatatattgttatagataatatt |
43777452 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 14538039 - 14537999
Alignment:
| Q |
148 |
ataattgaaataatgaaaaatctagcccaaaatctctcatt |
188 |
Q |
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| T |
14538039 |
ataattgaaataataaaaaatatagcccaaaatctctcatt |
14537999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 7718313 - 7718378
Alignment:
| Q |
120 |
attattatagaaaagatagttaaagagaataattgaaataatgaaaaatctagcccaaaatctctc |
185 |
Q |
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| T |
7718313 |
attattatagaaaagtttgttcaaggatataattagaataatgaaaaatctagtccaaaatctctc |
7718378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 13765917 - 13765852
Alignment:
| Q |
117 |
atcattattatagaaaagatagttaaagagaataattgaaataatgaaaaatctagcccaaaatct |
182 |
Q |
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| T |
13765917 |
atcattattatagaaaaaattgttttagagtataatttagataatgaaaaattcagcccaaaatct |
13765852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 42561686 - 42561762
Alignment:
| Q |
108 |
caacaatatatcattattatagaaaagatagttaaagagaataattgaaataatgaaaaatctagcccaaaatctct |
184 |
Q |
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| T |
42561686 |
caacaatataacattgttatagaaaaatttgttgaagggaataattggaataatgaaaaagtcagcccaaaatctct |
42561762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 42560996 - 42561071
Alignment:
| Q |
108 |
caacaatatatcattattatagaaaagatagttaaagagaataattgaaataatgaaaaatctagcccaaaatctc |
183 |
Q |
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| T |
42560996 |
caacaatataacattattatagaaaaatttgtttaagggtataattggaataatgaaaaatccaatccaaaatctc |
42561071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 32547389 - 32547435
Alignment:
| Q |
121 |
ttattatagaaaagatagttaaagagaataattgaaataatgaaaaa |
167 |
Q |
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| T |
32547389 |
ttattatagaaaaaattgtttaagagtataattgaaataatgaaaaa |
32547435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 27175198 - 27175125
Alignment:
| Q |
108 |
caacaatatatcattattatagaaaagatagttaaagagaataattgaaataatgaaaaatctagcccaaaatc |
181 |
Q |
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| T |
27175198 |
caacaatataacattattatagaaaacattgtttaatggtataattggaataacaaaaaatccagcccaaaatc |
27175125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 49758125 - 49758194
Alignment:
| Q |
110 |
acaatatatcattattatagaaaagatagttaaagagaataattgaaataatgaaaaatctagcccaaaa |
179 |
Q |
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| T |
49758125 |
acaatataatattattatagaaaaaattgtttaagggtataattgaaataataaaaaatccaacccaaaa |
49758194 |
T |
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