View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_180 (Length: 251)
Name: NF9917A_low_180
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_180 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 31700742 - 31700971
Alignment:
| Q |
12 |
atgaagcctaataacgtttacaattacaacttcatccgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtgg |
111 |
Q |
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| T |
31700742 |
atgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtgg |
31700841 |
T |
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| Q |
112 |
tacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgacca |
211 |
Q |
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| T |
31700842 |
tacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtgacca |
31700941 |
T |
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| Q |
212 |
ctatggtctat-tggagtcaatggatactg |
240 |
Q |
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| T |
31700942 |
ctatggtctatgtggagtcaatggatactg |
31700971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 31723332 - 31723521
Alignment:
| Q |
49 |
gcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgctacat |
148 |
Q |
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| T |
31723332 |
gcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgatacgt |
31723431 |
T |
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| Q |
149 |
atggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
237 |
Q |
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| T |
31723432 |
atggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 31716089 - 31716276
Alignment:
| Q |
51 |
aataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgctacatat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || |||||||||||| ||| |
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| T |
31716089 |
aataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtat |
31716188 |
T |
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| Q |
151 |
ggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
237 |
Q |
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| T |
31716189 |
ggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31716276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 31721963 - 31722150
Alignment:
| Q |
51 |
aataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgctacatat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || |||||||||||| ||| |
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| T |
31721963 |
aataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgctacgtat |
31722062 |
T |
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| Q |
151 |
ggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
237 |
Q |
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|||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| ||||||| || ||||||||||||||| |
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| T |
31722063 |
ggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31722150 |
T |
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