View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_182 (Length: 251)
Name: NF9917A_low_182
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_182 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 2272472 - 2272699
Alignment:
| Q |
11 |
ttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgt |
110 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272472 |
ttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgt |
2272571 |
T |
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| Q |
111 |
tatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctctt |
210 |
Q |
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| T |
2272572 |
tatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctctt |
2272671 |
T |
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| Q |
211 |
aaacctctgatgatctttgtcgatgtct |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2272672 |
aaacctctgatgatctttgtcgatgtct |
2272699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 2274030 - 2274262
Alignment:
| Q |
11 |
ttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgt |
110 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274030 |
ttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgt |
2274129 |
T |
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| Q |
111 |
tatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctctt |
210 |
Q |
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| T |
2274130 |
tatgttgtaccataaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctctt |
2274229 |
T |
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| Q |
211 |
aaacctctgatgatctttgtcgatgtctatgat |
243 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
2274230 |
aaacctctgatgatctttgtcgatgtctctgat |
2274262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 373535 - 373328
Alignment:
| Q |
11 |
ttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgt |
110 |
Q |
| |
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||||||||||| || ||||||||||||||||| || ||| | ||||||||||||||| | |||||||||||| || |||||||||||||||| ||| |
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| T |
373535 |
ttagggttagggtttgggacacgatgtagtgtcctaccataaccaagtgctatttgaaataagaaaacaacagcaatgagtatgagcatcacagcagtgt |
373436 |
T |
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| Q |
111 |
tatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctctt |
210 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||| | | |||||||||| ||||| ||||| |||| || ||||||| | | |||| |
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| T |
373435 |
catgttccgccatgaatttcccaaaatatgatgacatattcattgcaccgatcataatcaataccaaggataaactcattgtagtcacaactattttctt |
373336 |
T |
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| Q |
211 |
aaacctct |
218 |
Q |
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|||||||| |
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| T |
373335 |
aaacctct |
373328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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