View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_192 (Length: 249)
Name: NF9917A_low_192
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_192 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 53727074 - 53727231
Alignment:
| Q |
1 |
agaagaatagagcttaattttctatgtgtttctgttcacgttggaacgtaatattatatagcaacaaaactgacttggtcttgcaaaactaaagccacaa |
100 |
Q |
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| T |
53727074 |
agaagaatagagcttaattttctatgtgtttttgttcacgttggaacgtaatattatatagcaacaaaactgacttggtcttgcaaaaataaagccacaa |
53727173 |
T |
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| Q |
101 |
taatagctaacaaatttgcacgtttttgagaatgaaaaagtaactcttgtaaacaagt |
158 |
Q |
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| T |
53727174 |
taatagctaacaaatttgcacgtttttgaaaatgaaaaagtaactgttgtaaacaagt |
53727231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 53731596 - 53731639
Alignment:
| Q |
115 |
tttgcacgtttttgagaatgaaaaagtaactcttgtaaacaagt |
158 |
Q |
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| T |
53731596 |
tttgcacgtttttgagaatgaaaaagtaactgttgtaaacaagt |
53731639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 23544451 - 23544294
Alignment:
| Q |
1 |
agaagaatagagcttaattttctatgtgtttctgttcacgttggaacgtaatattatatagcaacaaaactgacttggtcttgcaaaactaaagccacaa |
100 |
Q |
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| T |
23544451 |
agaagaatagagcttaattttctatgtgtttttgttcacgttggaacgtaatattatatagcaacaaagctgacttggtcttgcaaaaataaagccacaa |
23544352 |
T |
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| Q |
101 |
taatagctaacaaatttgcacgtttttgagaatgaaaaagtaactcttgtaaacaagt |
158 |
Q |
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| T |
23544351 |
taatagctaacaaatttgcacgtttttgataatgaaaaagtaactgttgtaaacaagt |
23544294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 19229918 - 19230059
Alignment:
| Q |
9 |
agagcttaattttctatgtgtttctgttcacgttggaacgtaatattatatagcaacaaaactgacttggtcttgcaaaactaaagccacaataatagct |
108 |
Q |
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||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
19229918 |
agagcttaattttctatatttt---gttcacgttggaatgtaatattatatagcaacaaaattgactttgtcttgcaaaaataaagccacaataatagct |
19230014 |
T |
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| Q |
109 |
aacaaatttgcacgtttttgagaatgaaaaagtaactcttgtaaacaa |
156 |
Q |
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| T |
19230015 |
aacaaatttgcacg--tttgggaatg-aaaagtaactgttgtaaacaa |
19230059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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