View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_193 (Length: 249)
Name: NF9917A_low_193
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_193 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 1831604 - 1831845
Alignment:
| Q |
3 |
catagatagaaaaatttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaactt |
102 |
Q |
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| T |
1831604 |
catagacagaaaaatt-caaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaactt |
1831702 |
T |
|
| Q |
103 |
cataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtg-a |
201 |
Q |
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| T |
1831703 |
cagaatgtttagtgatgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaa |
1831802 |
T |
|
| Q |
202 |
ccttaggtgtgtaaagaatgaagataaggagctagttgaccct |
244 |
Q |
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| T |
1831803 |
tcttaagcttgtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 15490592 - 15490418
Alignment:
| Q |
18 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
117 |
Q |
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|||| |||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| | |||||| | || |||||| | |
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| T |
15490592 |
ttcataagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttaggga |
15490493 |
T |
|
| Q |
118 |
tgcaccagaag--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
190 |
Q |
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| T |
15490492 |
tgcatcagaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 16944223 - 16944109
Alignment:
| Q |
18 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
117 |
Q |
| |
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||||||||||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| |
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| T |
16944223 |
ttcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtga |
16944124 |
T |
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| Q |
118 |
tgcaccagaagaaat |
132 |
Q |
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||||||||||||||| |
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| T |
16944123 |
tgcaccagaagaaat |
16944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 17014888 - 17014774
Alignment:
| Q |
18 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
117 |
Q |
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||||||||||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| |
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| T |
17014888 |
ttcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtga |
17014789 |
T |
|
| Q |
118 |
tgcaccagaagaaat |
132 |
Q |
| |
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||||||||||||||| |
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| T |
17014788 |
tgcaccagaagaaat |
17014774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 9816931 - 9817073
Alignment:
| Q |
18 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
117 |
Q |
| |
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||||||||||||||||||| ||| ||||| ||| | |||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| |
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| T |
9816931 |
ttcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtga |
9817030 |
T |
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| Q |
118 |
tgcaccagaagaaatatgctacaaatattttaaagagattcaa |
160 |
Q |
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| T |
9817031 |
tgcactagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
60 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
159 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||||||| |||||| | ||||| | ||||| |||| |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
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| Q |
160 |
acatgatgggcttcaatcctgcatctacac |
189 |
Q |
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||||| || || ||||||||||||||||| |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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