View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_197 (Length: 249)
Name: NF9917A_low_197
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_197 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 45200606 - 45200841
Alignment:
| Q |
4 |
ggacatcaacaccacaccgacaattgattattgttgtcgacatgtcaatgtctgttattcatagattgtaaaaaatataatgtaacaaactgtgagtttg |
103 |
Q |
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| T |
45200606 |
ggacatcaacaccacaccgacaaatgattattgttgtcgacatgtcaatgtctgttattcatagattgtaacaaataaaatgtaacaaacggtgagtttt |
45200705 |
T |
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| Q |
104 |
tcaaaatcacggtgacatcatgattttgttgaagctatgtatggcttttaccaaaatcacaatgactcatcatgattctaatgctacgcttcaccgtcaa |
203 |
Q |
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| T |
45200706 |
tcaaaatcacagtgacattatgattttgttgaagctaagtatggcttttaccaaaatcacaatgactcatcgtgattctaaagctacgcttcaccgtcaa |
45200805 |
T |
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| Q |
204 |
tcaaaacattcacaaagtagaaaaacttacgaggtc |
239 |
Q |
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| T |
45200806 |
tcaaaacattcacaaagtagaaaaacttacgaggtc |
45200841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 7873062 - 7873108
Alignment:
| Q |
95 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaagctat |
141 |
Q |
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| T |
7873062 |
gtgagtttgataaaattacggtgacaccatgattttgttgaagctat |
7873108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 23585692 - 23585733
Alignment:
| Q |
96 |
tgagtttgtcaaaatcacggtgacatcatgattttgttgaag |
137 |
Q |
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| T |
23585692 |
tgagtttgacaaaatcacagtgacaacatgattttgttgaag |
23585733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 27870987 - 27870946
Alignment:
| Q |
95 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaa |
136 |
Q |
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| T |
27870987 |
gtgagtttgataaaatcacggtgacaccatgattttgttgaa |
27870946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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