View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_20 (Length: 430)
Name: NF9917A_low_20
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 219734 - 220134
Alignment:
| Q |
9 |
gagatgaaatttgattttaaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttatcagaaaaggttgaatactttaacatcaatgccaaa |
108 |
Q |
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| T |
219734 |
gagatgaaatttgattttgaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttttcagaaaaggctgaatactttaacatcagtgccaaa |
219833 |
T |
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| Q |
109 |
acctatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtaccttttcagttgcaaaaaacctatacactaccggccgtgggaactgt |
208 |
Q |
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| T |
219834 |
acgtatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtagcttttcagttgcaaaaaaactatacactaccggtcgtgggaaatgt |
219933 |
T |
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| Q |
209 |
tcttccaaagagcgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcggatatagtcgcattcgcaaa |
308 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
219934 |
tcttccaaagagtgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcagatatagtcgcattcgcgaa |
220033 |
T |
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| Q |
309 |
gaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
220034 |
gaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtta |
220133 |
T |
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| Q |
409 |
g |
409 |
Q |
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| T |
220134 |
g |
220134 |
T |
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