View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_203 (Length: 248)
Name: NF9917A_low_203
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_203 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 6306842 - 6306688
Alignment:
| Q |
86 |
aaccgaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcac |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
6306842 |
aaccgaagcaaactcattcagtatcacttctcgacctgaagaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccaaagatattcac |
6306743 |
T |
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| Q |
186 |
atcgatcctttcaccctggtttagcttcttgttaattatgtcatgtgttcttctc |
240 |
Q |
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| T |
6306742 |
atcgatcctttcaccctggtttagcttcttattaattatgtcatgtgttcttctc |
6306688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 20773 - 20623
Alignment:
| Q |
89 |
cgaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcacatc |
188 |
Q |
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| T |
20773 |
cgaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacagcatcgccaccaaagatattcacatc |
20674 |
T |
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| Q |
189 |
gatcctttcaccctggtttagcttcttgttaattatgtcatgtgttcttct |
239 |
Q |
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| T |
20673 |
gatcctttcgcttggatttagcttcttgttaattatgtcatgtgttcttct |
20623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 39539039 - 39538896
Alignment:
| Q |
90 |
gaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcacatcg |
189 |
Q |
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||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
39539039 |
gaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacggcgttgccaccaaagatattcacatcg |
39538940 |
T |
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| Q |
190 |
atcctttcaccctggtttagcttcttgttaattatgtcatgtgt |
233 |
Q |
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| T |
39538939 |
atcctttcacctgggtttagcttcttgttaattacgtcatgtgt |
39538896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 33809225 - 33809090
Alignment:
| Q |
89 |
cgaagcaaactcattcagtatcacttctcgacctgaagaatccgtagctaattcaaatccttctttcacggacaacgtcgccaccaaagatattcacatc |
188 |
Q |
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|||||||||||||||| |||||||||||||||| || |||| ||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |
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| T |
33809225 |
cgaagcaaactcattcggtatcacttctcgacccgatgaatgcgtcgctaattcaaatccttctttcaccgacggcgtcgccacaaaagatattcacatc |
33809126 |
T |
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| Q |
189 |
gatcctttcaccctggtttagcttcttgttaattat |
224 |
Q |
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|||||||| ||| |||||||||||||||||||||| |
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| T |
33809125 |
gatcctttgacctgggtttagcttcttgttaattat |
33809090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 44257456 - 44257493
Alignment:
| Q |
203 |
ggtttagcttcttgttaattatgtcatgtgttcttctc |
240 |
Q |
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| T |
44257456 |
ggtttagcttcttattaattatgtcatgtgttcttctc |
44257493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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