View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_205 (Length: 247)
Name: NF9917A_low_205
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_205 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 48592763 - 48592537
Alignment:
| Q |
21 |
tcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592763 |
tcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgta |
48592664 |
T |
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| Q |
121 |
tgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48592663 |
tgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatctgtgttacctcgcg |
48592564 |
T |
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| Q |
221 |
aaccaaagcccttacttgttctgcttg |
247 |
Q |
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| T |
48592563 |
aaccaaagccctaacttgttctgcttg |
48592537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 48602458 - 48602232
Alignment:
| Q |
21 |
tcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602458 |
tcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgta |
48602359 |
T |
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| Q |
121 |
tgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48602358 |
tgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatctgtgttacctcgcg |
48602259 |
T |
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| Q |
221 |
aaccaaagcccttacttgttctgcttg |
247 |
Q |
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| T |
48602258 |
aaccaaagccctaacttgttctgcttg |
48602232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 23231569 - 23231795
Alignment:
| Q |
21 |
tcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23231569 |
tcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcatacctcttgtgta |
23231668 |
T |
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| Q |
121 |
tgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcg |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23231669 |
tgtccaaggccctttttttaaaaccttgcaagtcaaagttcttgaaaaatcctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcg |
23231768 |
T |
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| Q |
221 |
aaccaaagcccttacttgttctgcttg |
247 |
Q |
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| T |
23231769 |
aaccaaagccctaacttgttctgcttg |
23231795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 23224265 - 23224441
Alignment:
| Q |
50 |
cttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctttttaaaaccttgc |
149 |
Q |
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|||||||| ||||| | ||| ||||||||| |||| | ||| |||| |||||||||||||| || ||||| ||||| ||||||||||| | |||||| |
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| T |
23224265 |
cttggctttccttcgtgattcctcacgatcacaaattaacttctccagaaaagcatcatacctcttatgtatatccaatgccctctttttgagaccttga |
23224364 |
T |
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| Q |
150 |
aagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaa |
226 |
Q |
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||||| ||||||||| ||| |||||||||||| |||| |||||||| || |||||||| || || || |||||||| |
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| T |
23224365 |
aagtccaagttcttgcaaaatcctataaaatccgaaatgttaaattccccgaaaatttgggtcacatctcgaaccaa |
23224441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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