View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_209 (Length: 247)
Name: NF9917A_low_209
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_209 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 5823266 - 5823500
Alignment:
| Q |
13 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
112 |
Q |
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| T |
5823266 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
5823365 |
T |
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| Q |
113 |
taccttgcggttattgccactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcat |
212 |
Q |
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| T |
5823366 |
taccttgaggttattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcat |
5823465 |
T |
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| Q |
213 |
ctgaatgctattatggactgaaccttaagcctatg |
247 |
Q |
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| T |
5823466 |
ctgaatgctattttggacttaaccttaagcctatg |
5823500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 247
Target Start/End: Complemental strand, 5832763 - 5832566
Alignment:
| Q |
50 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgcggttattgccactggtgctatggctcagt |
149 |
Q |
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| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
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| Q |
150 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattatggactgaaccttaagcctatg |
247 |
Q |
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| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaaccttaagcctatg |
5832566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 78151 - 78198
Alignment:
| Q |
131 |
actggtgctatggctcagtacattccaacccttgattattacagtggt |
178 |
Q |
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| T |
78151 |
actggtgctatggctcaatacattccaacacttaattactacagtggt |
78198 |
T |
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