View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_213 (Length: 246)
Name: NF9917A_low_213
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_213 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 3586866 - 3586705
Alignment:
| Q |
63 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaat |
162 |
Q |
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| T |
3586866 |
tacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
3586767 |
T |
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| Q |
163 |
gcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcc |
225 |
Q |
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| T |
3586766 |
gcgggaa-agttaagataaacatgtagaaaatgcgggaacagttaagaagaataagcatgtcc |
3586705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 9789599 - 9789750
Alignment:
| Q |
63 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaat |
162 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
9789599 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaagatatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
9789698 |
T |
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| Q |
163 |
gcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaa |
214 |
Q |
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| T |
9789699 |
gcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagaa |
9789750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 44504713 - 44504580
Alignment:
| Q |
70 |
agatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaatgcgggaa |
169 |
Q |
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| T |
44504713 |
agatctgaaaagtctgacaacagcagcagctaagttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaa |
44504614 |
T |
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| Q |
170 |
tagttaagataagcatgtagaaaatgcaggaaca |
203 |
Q |
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| T |
44504613 |
cagttgagataaacatgtagaaaatgcgggaaca |
44504580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 31678598 - 31678513
Alignment:
| Q |
63 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctata |
148 |
Q |
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| T |
31678598 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaaaagatgtgggaacggttaagaagaataacttatatatata |
31678513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 31678441 - 31678375
Alignment:
| Q |
159 |
aaatgcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcc |
225 |
Q |
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| T |
31678441 |
aaatgcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagcataagcatgtcc |
31678375 |
T |
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