View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_222 (Length: 245)
Name: NF9917A_low_222
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_222 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 54793816 - 54793601
Alignment:
| Q |
22 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgacttttt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54793816 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54793717 |
T |
|
| Q |
122 |
cacattctcctgccaaacagagcaaggctccatggccttcatcccagcttcttcttgagaaagaactcttttcttgcagacttgcacaaaaaccttctca |
221 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
54793716 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctca |
54793617 |
T |
|
| Q |
222 |
tcaagatctcccattc |
237 |
Q |
| |
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||||| |||||||||| |
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| T |
54793616 |
tcaaggtctcccattc |
54793601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 52286496 - 52286282
Alignment:
| Q |
23 |
gcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgactttttc |
122 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| ||||| || ||| |
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| T |
52286496 |
gcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttc |
52286397 |
T |
|
| Q |
123 |
acattctcctgccaaacagagcaaggctccatggccttcatcccagcttcttcttgagaaagaactcttttcttgcagacttgcacaaaaaccttctcat |
222 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||| |||| || |
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| T |
52286396 |
acattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgat |
52286297 |
T |
|
| Q |
223 |
caagatctcccattc |
237 |
Q |
| |
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|||| |||||||||| |
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| T |
52286296 |
caaggtctcccattc |
52286282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 54775823 - 54775932
Alignment:
| Q |
22 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgacttttt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54775823 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54775922 |
T |
|
| Q |
122 |
cacattctcc |
131 |
Q |
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||||| |||| |
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| T |
54775923 |
cacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 801656 - 801450
Alignment:
| Q |
26 |
tagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgactttttcaca |
125 |
Q |
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|||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
801656 |
tagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcaca |
801557 |
T |
|
| Q |
126 |
ttctcctgccaaacagagcaaggctccatggccttcatcccagcttcttcttgagaaagaactcttttcttgcagacttgcacaaaaaccttctcatcaa |
225 |
Q |
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|| |||||||| | ||||||| |||| | |||||| ||||||||||| || |||| || ||||||||||||| | | |||||||||||||| |||| |
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| T |
801556 |
ttttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaa |
801460 |
T |
|
| Q |
226 |
gatctcccat |
235 |
Q |
| |
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| |||||||| |
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|
| T |
801459 |
ggtctcccat |
801450 |
T |
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