View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_223 (Length: 245)

Name: NF9917A_low_223
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_223
NF9917A_low_223
[»] chr1 (4 HSPs)
chr1 (56-224)||(7386417-7386585)
chr1 (56-187)||(19991220-19991350)
chr1 (56-134)||(19322655-19322733)
chr1 (193-224)||(19322751-19322782)
[»] chr5 (5 HSPs)
chr5 (56-162)||(4925269-4925375)
chr5 (56-168)||(35211232-35211344)
chr5 (56-187)||(35205787-35205918)
chr5 (12-58)||(7497294-7497340)
chr5 (188-224)||(4925202-4925238)
[»] chr4 (2 HSPs)
chr4 (56-184)||(23563558-23563686)
chr4 (56-156)||(48265287-48265387)
[»] chr3 (3 HSPs)
chr3 (56-187)||(52314493-52314624)
chr3 (56-187)||(53464903-53465034)
chr3 (56-152)||(1995809-1995905)
[»] chr2 (2 HSPs)
chr2 (56-122)||(39375538-39375604)
chr2 (181-224)||(39375627-39375670)
[»] chr8 (1 HSPs)
chr8 (56-143)||(40278517-40278604)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 7386585 - 7386417
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7386585 tgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaattatacatggtagcaatgcattact 7386486  T
Q  156 acgttccctttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtata 224  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7386485 acgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtata 7386417  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 19991220 - 19991350
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    ||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||  |||| ||||||    
T  19991220 tgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatggattact 19991319  T
Q  156 acgttccctttccagtaattgttagattttgt 187  Q
    || |||| ||||| | ||||||| ||||||||    
T  19991320 accttccttttcctgcaattgtt-gattttgt 19991350  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 19322655 - 19322733
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactat 134  Q
    |||||||||| ||| ||||||| | ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  19322655 tgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 19322751 - 19322782
Alignment:
Q  193 tttgagttttatttcttttaattaatagtata 224  Q
    ||||||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtata 19322782  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 4925375 - 4925269
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4925375 tgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaactatacatggtaacaatgcattact 4925276  T
Q  156 acgttcc 162  Q
    |||||||    
T  4925275 acgttcc 4925269  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 35211232 - 35211344
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    |||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| |||||||||| |||||||| |||||||||||    
T  35211232 tgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggttaaactatccatggtagtaatgcattact 35211331  T
Q  156 acgttccctttcc 168  Q
     | |||| |||||    
T  35211332 gccttccttttcc 35211344  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 35205918 - 35205787
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    |||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| |||||||||| ||||| || |||||||||||    
T  35205918 tgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggttaaactatccatggaagtaatgcattact 35205819  T
Q  156 acgttccctttccagtaattgttagattttgt 187  Q
     | |||| ||||| | ||||||  ||||||||    
T  35205818 gccttccttttcctgcaattgtctgattttgt 35205787  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 7497294 - 7497340
Alignment:
Q  12 agatggacatcacgcacaacactatcatatagagttctttacattgg 58  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||    
T  7497294 agatggacataacacacaacactatcatattgagttctttacattgg 7497340  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 4925238 - 4925202
Alignment:
Q  188 aatactttgagttttatttcttttaattaatagtata 224  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4925238 aatactttgagtattatttcttttaattaatagtata 4925202  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 23563686 - 23563558
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    ||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||||||||| |||||| | |||||||||||    
T  23563686 tgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagttaaactatccatggtggtaatgcattact 23563587  T
Q  156 acgttccctttccagtaattgttagattt 184  Q
    || |||| ||||| | |||||| ||||||    
T  23563586 accttccttttcctgcaattgtcagattt 23563558  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 48265387 - 48265287
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    ||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||    
T  48265387 tgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtagtaatgcattact 48265288  T
Q  156 a 156  Q
    |    
T  48265287 a 48265287  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 52314624 - 52314493
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    |||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||    
T  52314624 tgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaactatccatggtagtaatgcattact 52314525  T
Q  156 acgttccctttccagtaattgttagattttgt 187  Q
    || |||| ||||| | ||||||  ||||||||    
T  52314524 accttccttttcctgcaattgtctgattttgt 52314493  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 53465034 - 53464903
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattact 155  Q
    |||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||    
T  53465034 tgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaactatccatggtagtaatgcattact 53464935  T
Q  156 acgttccctttccagtaattgttagattttgt 187  Q
    || |||| ||||| | ||||||  ||||||||    
T  53464934 accttccttttcctgcaattgtctgattttgt 53464903  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 1995905 - 1995809
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcatt 152  Q
    |||||||||  ||||| || ||||| || | ||||||||||| | |||||||||| |||||  ||||||| ||||| |  ||| |||||||||||||    
T  1995905 tgggtggtaatacactgactaatgcacttgagtcataatatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcatt 1995809  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 39375538 - 39375604
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgag 122  Q
    |||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  39375538 tgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag 39375604  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 39375627 - 39375670
Alignment:
Q  181 attttgtaatactttgagttttatttcttttaattaatagtata 224  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  39375627 attttgtaatactttaagttttatttcttttaattaataatata 39375670  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 40278517 - 40278604
Alignment:
Q  56 tgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtag 143  Q
    ||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||||||||| ||||||||    
T  40278517 tgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtagttaaactatccatggtag 40278604  T

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