View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_227 (Length: 244)
Name: NF9917A_low_227
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_227 |
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Alignment Details
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 19063535 - 19063469
Alignment:
| Q |
159 |
taagttcatgtttggattcaatgtttggagagctaaaagtgatttcattttaagcggtaaacataat |
225 |
Q |
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| T |
19063535 |
taagttcatgcttggattcaatgtttggagagctaaaagtgatttcattttaagcggtaaacttaat |
19063469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 19064719 - 19064647
Alignment:
| Q |
33 |
tattaattataacaggttacatacctcaattgtgactaaattaaaagga-ttctataaatcattacacaacaa |
104 |
Q |
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| T |
19064719 |
tattaattataacttgttacatacctcaattgtgactaaattaaaaggatttctataaatcactacacaacaa |
19064647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 5899207 - 5899248
Alignment:
| Q |
161 |
agttcatgtttggattcaatgtttggagagctaaaagtgatt |
202 |
Q |
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| T |
5899207 |
agttcatgtttggattcaattttgggagagttaaaagtgatt |
5899248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 45101555 - 45101584
Alignment:
| Q |
9 |
atggttgttcaaatatcactactctattaa |
38 |
Q |
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| T |
45101555 |
atggttgttcaaatatcactactctattaa |
45101584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7161443 - 7161410
Alignment:
| Q |
1 |
tatttaacatggttgttcaaatatcactactcta |
34 |
Q |
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| T |
7161443 |
tatttaagatggttgttcaaatatcactactcta |
7161410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 7294011 - 7293978
Alignment:
| Q |
9 |
atggttgttcaaatatcactactctattaattat |
42 |
Q |
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| T |
7294011 |
atggttgttcaaatatcactactctattgattat |
7293978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 6126614 - 6126642
Alignment:
| Q |
9 |
atggttgttcaaatatcactactctatta |
37 |
Q |
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| T |
6126614 |
atggttgttcaaatatcactactctatta |
6126642 |
T |
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