View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_231 (Length: 243)
Name: NF9917A_low_231
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_231 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9603651 - 9603420
Alignment:
| Q |
1 |
gtatattggtattttaataccacgacattgaacatgtttaatatattgacgtttccatgtcattatatttatgaattttttatcaataaatagtttgtat |
100 |
Q |
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| T |
9603651 |
gtatattggcattttaataccacgacattgaacatgtttaatatattgacgtttccatgtcattatatttatgaatttt--atcaataaatagttcgtat |
9603554 |
T |
|
| Q |
101 |
tgaatgtatttgagtgtttgaattaatgcgtaaaacaaaacttctgcatttgagtgttgaatgtgttagttaaaagtgtttgagtgttgaatgtgtaaag |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603553 |
tgaatgtatttgagtgtttgagttaatgcgtaaaacaaaagttctgtatttgagtgttgaatgtgttagttaaaagtgtttgagtgttgaatgtgtaaag |
9603454 |
T |
|
| Q |
201 |
cagaggttatgtattctgcattccgtagttctgt |
234 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
9603453 |
cagaagttatgtattctgcattccgtagttctgt |
9603420 |
T |
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