View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_237 (Length: 242)
Name: NF9917A_low_237
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_237 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 341204 - 341424
Alignment:
| Q |
1 |
tgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341204 |
tgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
341303 |
T |
|
| Q |
101 |
aagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341304 |
aagaaaatgactgaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaa |
341403 |
T |
|
| Q |
201 |
tcaatgctgaaagtgatgatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
341404 |
tcaatgctgaaagtgatgatg |
341424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 332912 - 333132
Alignment:
| Q |
1 |
tgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
100 |
Q |
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||||||||||||||||||||| ||||| | ||||||||||||||||| |||||| ||||||||| |||| |||||| ||||||||||| || |||||| |
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| T |
332912 |
tgagaaggcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgtttagaagatgcaaaaatggcttcaaattggggaagag |
333011 |
T |
|
| Q |
101 |
aagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaa |
200 |
Q |
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| T |
333012 |
aaaaaaatgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaa |
333111 |
T |
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| Q |
201 |
tcaatgctgaaagtgatgatg |
221 |
Q |
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|||||| ||||||||| |||| |
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| T |
333112 |
tcaatgttgaaagtgacgatg |
333132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 337167 - 337386
Alignment:
| Q |
2 |
gagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
101 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
337167 |
gagaaggcttttaaccaagctgaagaatccatcttctacagacacactgtgccggcttgtgtttggaagttgcaaagttggcttcaaatcggtgaagaga |
337266 |
T |
|
| Q |
102 |
agaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaat |
201 |
Q |
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| T |
337267 |
aaaaaatgactgaagcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaat |
337366 |
T |
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| Q |
202 |
caatgctgaaagtgatgatg |
221 |
Q |
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|||| | ||||| |||||| |
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| T |
337367 |
taatggtcaaagtaatgatg |
337386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 347549 - 347412
Alignment:
| Q |
1 |
tgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
100 |
Q |
| |
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|||||| |||||||||||| ||||||| ||| ||||||||||| | ||||| | |||||||||||||||||| ||||||||||| || |||||| |
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| T |
347549 |
tgagaaagcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagag |
347450 |
T |
|
| Q |
101 |
aagaaaatgacagaggcatgcaaggtatttgatcaatt |
138 |
Q |
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|| |||||||| | |||||||| |||||||||||||| |
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| T |
347449 |
aaaaaaatgaccaaagcatgcaaagtatttgatcaatt |
347412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 356208 - 356086
Alignment:
| Q |
1 |
tgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
100 |
Q |
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|||||||||||| |||||| |||||| ||| ||||||||||| | ||||| | |||||||||||||||||| ||||||||||| || |||||| |
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| T |
356208 |
tgagaaggctttcaaccaaatcgaagagggcatattctatagacataaagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagag |
356109 |
T |
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| Q |
101 |
aagaaaatgacagaggcatgcaa |
123 |
Q |
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|| || ||||| |||||||||| |
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| T |
356108 |
aaaaatatgaccaaggcatgcaa |
356086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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