View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_24 (Length: 420)
Name: NF9917A_low_24
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 408
Target Start/End: Original strand, 29852290 - 29852692
Alignment:
| Q |
5 |
caccatagacaaatttttatcacttgaacctaa-ttatgcataatgctagattctatatcatgtgatttggagtggtatttcaatactcagtattttacc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29852290 |
caccatagacaaatttttatcacttgaacctaaattatgcataatgctagattctatatcatgtgatttggagtggtattccaatactcagtattttacc |
29852389 |
T |
|
| Q |
104 |
acatgtgacatggtcctcatcaaccctgacgtcacttgaagttaaaacacatttgaagacttttattttgtattttggttatttttacttacattcattg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29852390 |
acatgtgacatggtcctcatcaaccctgacgtcacttgaagttaaaacacatttgaagacttttattttgtattttggttattt--acttacattcattg |
29852487 |
T |
|
| Q |
204 |
tataattgcacattctatgtgttgattttttgtactacgggtaaggatgattttgtgttcattttgaatatttgttagatatcacttaactgtaattaaa |
303 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29852488 |
tgtaattgcacattctatgtgttgattttttgtactacgggtaaggatgattttgtgttcattttgaatatttgttagatatcacttaactgtaattaaa |
29852587 |
T |
|
| Q |
304 |
ctgtatcgagacaattggaatgtaccaatttacccgtatgcataaatgggatatattatataactttgttttaatctcctaaaacaagttttaatgctca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29852588 |
ctgtatcgagacaattggaatgtaccaatttacccgtatgcataaatgggatatattatataactttgttttaatctcctaaaataagttttaatgctca |
29852687 |
T |
|
| Q |
404 |
atttt |
408 |
Q |
| |
|
||||| |
|
|
| T |
29852688 |
atttt |
29852692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University