View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_243 (Length: 241)
Name: NF9917A_low_243
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_243 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 48065864 - 48066080
Alignment:
| Q |
5 |
aatgattattcacccggatatggtttgaagtacggattgagtggggtatatgtatgtatgtggtctttatctttttactaagattgtaacttaccaagtt |
104 |
Q |
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| T |
48065864 |
aatgattattcacccggatatggtttgaagtacggattgagtggggtatatg----tatgtggtctttatctttttactaagattgtaacttaccaagtt |
48065959 |
T |
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| Q |
105 |
tgtttgtggttctaaatgttataattttagctacaagttttttaaatttttcacctaaaaaattgcaccttggaataggaggatttcccttcattcaaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48065960 |
tgtttgtggttctaaatgttataattttagctacaacttttttaaatttttcacctaaaaaattgcaccttggaataggaggatttcccttcattcaaat |
48066059 |
T |
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| Q |
205 |
tttctaccgttcatgtatttg |
225 |
Q |
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| T |
48066060 |
tttctaccgttcatgtatttg |
48066080 |
T |
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