View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_244 (Length: 241)

Name: NF9917A_low_244
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_244
NF9917A_low_244
[»] chr3 (26 HSPs)
chr3 (20-231)||(41985638-41985852)
chr3 (22-231)||(41980864-41981073)
chr3 (139-231)||(9494822-9494914)
chr3 (125-231)||(9329846-9329952)
chr3 (125-231)||(9336550-9336656)
chr3 (125-231)||(9343855-9343961)
chr3 (125-231)||(9448324-9448430)
chr3 (125-227)||(9407380-9407482)
chr3 (125-231)||(9695616-9695722)
chr3 (128-224)||(9655360-9655456)
chr3 (125-231)||(9617463-9617569)
chr3 (128-224)||(9646367-9646463)
chr3 (140-231)||(9340681-9340772)
chr3 (128-227)||(9425587-9425686)
chr3 (125-227)||(9416587-9416689)
chr3 (139-229)||(9352913-9353003)
chr3 (140-231)||(9347997-9348088)
chr3 (140-231)||(9369651-9369742)
chr3 (125-227)||(9397799-9397903)
chr3 (159-227)||(9441815-9441883)
chr3 (133-197)||(9626488-9626552)
chr3 (125-173)||(9686751-9686799)
chr3 (119-230)||(9756391-9756502)
chr3 (125-227)||(9432910-9433012)
chr3 (181-231)||(9614009-9614059)
chr3 (178-231)||(9377096-9377149)
[»] chr8 (2 HSPs)
chr8 (20-185)||(13170579-13170744)
chr8 (20-231)||(44688680-44688891)
[»] chr1 (8 HSPs)
chr1 (20-231)||(18991214-18991422)
chr1 (130-231)||(4428641-4428742)
chr1 (143-231)||(235223-235311)
chr1 (174-231)||(4439870-4439927)
chr1 (148-204)||(8814385-8814441)
chr1 (143-204)||(251412-251473)
chr1 (148-231)||(231591-231674)
chr1 (150-204)||(246904-246958)
[»] chr2 (1 HSPs)
chr2 (128-231)||(20694304-20694407)
[»] chr6 (7 HSPs)
chr6 (143-228)||(7046852-7046937)
chr6 (125-231)||(7041506-7041612)
chr6 (143-204)||(7025793-7025854)
chr6 (143-204)||(7029850-7029911)
chr6 (143-204)||(9170854-9170915)
chr6 (145-204)||(9159515-9159574)
chr6 (143-204)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (125-200)||(450111-450186)
chr7 (138-200)||(3695731-3695792)
[»] chr5 (1 HSPs)
chr5 (139-192)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 41985852 - 41985638
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgtattggtttccctggtgaagatgg 116  Q
    ||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  117 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  217 ttttctgcttctgct 231  Q
    |||||||||||||||    
T  41985652 ttttctgcttctgct 41985638  T

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Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 41981073 - 41980864
Alignment:
Q  22 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgtattggtttccctggtgaagatggtttaa 121  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  122 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 221  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  222 tgcttctgct 231  Q
    ||||||||||    
T  41980873 tgcttctgct 41980864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 9494822 - 9494914
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgct 9494914  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 9329952 - 9329846
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  225 ttctgct 231  Q
    |||||||    
T  9329852 ttctgct 9329846  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 9336656 - 9336550
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  225 ttctgct 231  Q
    |||||||    
T  9336556 ttctgct 9336550  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 9343961 - 9343855
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  225 ttctgct 231  Q
    |||||||    
T  9343861 ttctgct 9343855  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 9448430 - 9448324
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  225 ttctgct 231  Q
    |||||||    
T  9448330 ttctgct 9448324  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 9407482 - 9407380
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  225 ttc 227  Q
    |||    
T  9407382 ttc 9407380  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 9695616 - 9695722
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  225 ttctgct 231  Q
     ||||||    
T  9695716 atctgct 9695722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 9655360 - 9655456
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | |||||||||||||||||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgc 9655456  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 9617463 - 9617569
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  225 ttctgct 231  Q
    |||||||    
T  9617563 ttctgct 9617569  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 9646367 - 9646463
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | |||||||||||||||||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgc 9646463  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 9340772 - 9340681
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgct 9340681  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 9425686 - 9425587
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T

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Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 9416689 - 9416587
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  225 ttc 227  Q
    |||    
T  9416589 ttc 9416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 9353003 - 9352913
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 229  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| |||||||||||||||||||||||    
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctg 9352913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 9348088 - 9347997
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgct 9347997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 9369742 - 9369651
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgct 9369651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 9397903 - 9397799
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 222  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  223 gcttc 227  Q
    |||||    
T  9397803 gcttc 9397799  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 9441815 - 9441883
Alignment:
Q  159 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| |||||||||||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 9441883  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 9626488 - 9626552
Alignment:
Q  133 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgtt 197  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| ||||||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgtt 9626552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 173  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 9756502 - 9756391
Alignment:
Q  119 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 218  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  219 ttctgcttctgc 230  Q
     ||||| |||||    
T  9756402 ctctgcatctgc 9756391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 9433012 - 9432910
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  225 ttc 227  Q
    |||    
T  9432912 ttc 9432910  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 9614009 - 9614059
Alignment:
Q  181 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    |||||||  ||||| |||||||||| ||||||||| |||||||||||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgct 9614059  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 9377149 - 9377096
Alignment:
Q  178 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgct 9377096  T

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Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgtattggtttccctggtgaagatggttt 119  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| ||   ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 44688680 - 44688891
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgtattggtttccctggtgaagatggttt 119  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| || |||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    |  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  220 tctgcttctgct 231  Q
    ||| || |||||    
T  44688880 tctactactgct 44688891  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 18991422 - 18991214
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgtattggtttccctggtgaagatggttt 119  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| |||||| |||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    ||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  220 tctgcttctgct 231  Q
    ||||||||||||    
T  18991225 tctgcttctgct 18991214  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 4428742 - 4428641
Alignment:
Q  130 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 229  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  230 ct 231  Q
    ||    
T  4428642 ct 4428641  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 235311 - 235223
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||    
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgct 235223  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 4439927 - 4439870
Alignment:
Q  174 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    |||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgct 4439870  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 8814385 - 8814441
Alignment:
Q  148 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttgggg 8814441  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 251412 - 251473
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||    
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttgggg 251473  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 231674 - 231591
Alignment:
Q  148 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgct 231  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgct 231591  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 246958 - 246904
Alignment:
Q  150 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttgggg 246904  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 20694304 - 20694407
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  228 tgct 231  Q
    ||||    
T  20694404 tgct 20694407  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 7046937 - 7046852
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttct 228  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttct 7046852  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 7041612 - 7041506
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  225 ttctgct 231  Q
    |||||||    
T  7041512 ttctgct 7041506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7025854 - 7025793
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 9170915 - 9170854
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 9159515 - 9159574
Alignment:
Q  145 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7012918 - 7012857
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 450111 - 450186
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 200  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | ||||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 3695792 - 3695731
Alignment:
Q  138 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 200  Q
    |||| |||||||| ||||||| ||  ||||||||  |||||||||||||||||||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttctt 3695731  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 18571213 - 18571160
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt 192  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagtt 18571160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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