View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_245 (Length: 241)
Name: NF9917A_low_245
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_245 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 10860832 - 10860673
Alignment:
| Q |
24 |
ttgtaatggcactaatcatgctcgtgacacatgctacttcaagcatggttttcctccaaggtatagatacaagaatgcttctcgtagtgtatgcactgat |
123 |
Q |
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| T |
10860832 |
ttgtaatgacactaatcatgctcttgatacatgctacttcaagcatggttttcctccaaggtatagatacaaggatgcttctcgtagtgtatgcactgat |
10860733 |
T |
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| Q |
124 |
tctattgcacaagaagttgattctgatgataacaacatggttttggttttgagtttaagc |
183 |
Q |
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| T |
10860732 |
tctattgcacaagaagttgattctgatgataacaacatggttttggttttgagtttaagc |
10860673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 10905850 - 10905742
Alignment:
| Q |
48 |
tgacacatgctacttcaagcatggttttcctccaaggtatagatacaagaatgcttctcgtagtgtatgcactgattctattgcacaagaagttgattct |
147 |
Q |
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| T |
10905850 |
tgacacatgctacttcaagcatggttttcctccaaggtttatattcaagaagtctgctcataaggaatgcactgtttctgttgcataaaaagttgattct |
10905751 |
T |
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| Q |
148 |
gatgataac |
156 |
Q |
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| T |
10905750 |
aatgataac |
10905742 |
T |
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