View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_248 (Length: 240)
Name: NF9917A_low_248
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_248 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 3067775 - 3067551
Alignment:
| Q |
16 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067775 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
3067676 |
T |
|
| Q |
116 |
gagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067675 |
gagaataagaggccaacacgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
3067576 |
T |
|
| Q |
216 |
cagaagatgaactaagtgaaacaaa |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3067575 |
cagaagatgaactaagtgaaacaaa |
3067551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 3055555 - 3055768
Alignment:
| Q |
19 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
118 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||||||||| ||||| || |||| ||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3055555 |
ttggaccatagtgtggtctaaacctgataatatatgtaattatattgctaatgaagggagtggtgtttgtggatataatagcttctgcactttgggagtt |
3055654 |
T |
|
| Q |
119 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
218 |
Q |
| |
|
||||||| |||||||||| ||||| |||| | ||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
3055655 |
gataagagaccaacatgtcagtgtccaaaacgatactcactggttgatcctgatgatccacttggtagctgcaagccagacttcatacaaggatgtgcag |
3055754 |
T |
|
| Q |
219 |
aagatgaactaagt |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3055755 |
aagatgaactaagt |
3055768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 3071411 - 3071190
Alignment:
| Q |
19 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
118 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||| ||| || || | |||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
3071411 |
ttggactacagtgtggtctcatcctaaaaatatatgtcaatatattgttagttcaggtagtggtgtttgtggatataataccatctgcactttgggagat |
3071312 |
T |
|
| Q |
119 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
218 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||| | |||||||| |||||| |||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
3071311 |
gataagagaccaacatgtcggtgtccaaaacgttactcactgcttgatcctgatgatccacatggtagctgcaagccagatttcatacaaggatgtgcag |
3071212 |
T |
|
| Q |
219 |
aagatgaactaagtgaaacaaa |
240 |
Q |
| |
|
||||||||| |||| ||||||| |
|
|
| T |
3071211 |
aagatgaacaaagtaaaacaaa |
3071190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 3040546 - 3040767
Alignment:
| Q |
19 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
118 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3040546 |
ttggactacagtgtggtctcatcctcgaaatatatgtcattattttgttactgaaggtagtggtgtttgtggatataatagcatatgcactttgggagat |
3040645 |
T |
|
| Q |
119 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
218 |
Q |
| |
|
||| ||| ||| ||| |||||||| | | ||||||||||| || ||||||||| |||| | |||||||||||||||||| || |||| |||| ||||| |
|
|
| T |
3040646 |
gatacgagaccagcatttcggtgtccagatagttactcactagttgatcctgactatccttatggtagctgcaagccagatttcgtacaaggatgtgcag |
3040745 |
T |
|
| Q |
219 |
aagatgaactaagtgaaacaaa |
240 |
Q |
| |
|
||||||||||| || ||||||| |
|
|
| T |
3040746 |
aagatgaactatgtaaaacaaa |
3040767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 3034690 - 3034906
Alignment:
| Q |
16 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
115 |
Q |
| |
|
||||||||| | |||||||||| ||||||| ||||||||| |||| || || ||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
3034690 |
aggttggaccacagtgtggtctaagcctgataatatatgtacttatattgttagtgcaggtagtggtgtttgtggatataatagcttatgcactttggaa |
3034789 |
T |
|
| Q |
116 |
gagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
215 |
Q |
| |
|
| ||||||| || | ||||| ||||| |||| | ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||| || |
|
|
| T |
3034790 |
gttgataagagaccgaaatgtcagtgtccaaaacgatactcgctggttgatcctgaagatccatttggtagctgcaagccagacttcatacaaggatgtg |
3034889 |
T |
|
| Q |
216 |
cagaagatgaactaagt |
232 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
3034890 |
cagaagatgaaccaagt |
3034906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 3042789 - 3042948
Alignment:
| Q |
73 |
aggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgac |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||| ||||| |||||||||||||||||| ||| | || |
|
|
| T |
3042789 |
aggtagtggtgtttgtggatataatagcttctgcactttgggagttgataagtgaccaacatgtcagtgtccaaaaagttactcactggttgatgccgat |
3042888 |
T |
|
| Q |
173 |
gatccatttggtagctgcaagccagacctcatacatggatatgcagaagatgaactaagt |
232 |
Q |
| |
|
|||||| |||||| ||| ||||| || |||| || |||| ||||||||||||||||||| |
|
|
| T |
3042889 |
gatccacttggtacttgcgagccaaacttcatgcaaggatgtgcagaagatgaactaagt |
3042948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 3063682 - 3063557
Alignment:
| Q |
73 |
aggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgac |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||| ||||| |||| ||||||||| | |||||| | |
|
|
| T |
3063682 |
aggtagtggtgtttgtggatataatagcttctgcactttgggagatgataagagaccaaaatgtcagtgtccaaaacagtactcactgattgatcctaat |
3063583 |
T |
|
| Q |
173 |
gatccatttggtagctgcaagccaga |
198 |
Q |
| |
|
||||||| ||| |||||||||||||| |
|
|
| T |
3063582 |
gatccatatggcagctgcaagccaga |
3063557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 25125466 - 25125326
Alignment:
| Q |
92 |
tataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgca |
191 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||| ||||| || |||||| |||||| ||| |
|
|
| T |
25125466 |
tataatagcttctgcactttgggagttgataagagaccaacatgtcagtgtccaaaaagttactcactggttgatcccgatgatccacttggtacttgcg |
25125367 |
T |
|
| Q |
192 |
agccagacctcatacatggatatgcagaagatgaactaagt |
232 |
Q |
| |
|
||| |||| |||| || |||| || |||||||||||||||| |
|
|
| T |
25125366 |
agcaagacttcatgcaaggatgtggagaagatgaactaagt |
25125326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University