View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_249 (Length: 240)
Name: NF9917A_low_249
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_249 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 40805878 - 40806076
Alignment:
| Q |
14 |
gaagaaaatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggag |
113 |
Q |
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| T |
40805878 |
gaagaatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggag |
40805977 |
T |
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| Q |
114 |
agaatttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaataaaaaagagtgacgaagttcaaaccccc |
212 |
Q |
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| T |
40805978 |
agaattcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
40806076 |
T |
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Target: scaffold0559 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 8765 - 8566
Alignment:
| Q |
14 |
gaagaaaatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttt-gga |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8765 |
gaagaatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttttgga |
8666 |
T |
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| Q |
113 |
gagaatttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaataaaaaagagtgacgaagttcaaaccccc |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8665 |
gagaattcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
8566 |
T |
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