View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_250 (Length: 240)
Name: NF9917A_low_250
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_250 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 4337875 - 4338102
Alignment:
| Q |
13 |
aatatccatacgcatgtccccaaaattattctctccatcaacaaaaaccctttttcccattcatacaaacaaatcaatcaccatcaccaataacagcaac |
112 |
Q |
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| T |
4337875 |
aatatccatacgcatgtccccaaaactattctctccatcaacaaaaaccctttttcccattcatacaaacaaatcaatcaccatcaccaacaacagcaac |
4337974 |
T |
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| Q |
113 |
agaacaaagctatcgttgctctgtttaagttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataaacgagtaccagtcgttatcga |
212 |
Q |
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| T |
4337975 |
agaacaaagctatcgttgctctatttaagttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataaacgagtaccagtcgttatcga |
4338074 |
T |
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| Q |
213 |
cctcgttcacgttttcatgggctgctgg |
240 |
Q |
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| T |
4338075 |
cctcgttcccgttttcatgggctgctgg |
4338102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 4321695 - 4321744
Alignment:
| Q |
142 |
ttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataa |
191 |
Q |
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| T |
4321695 |
ttcaagaaacggagcagtgtgtcctgttccgcaagaacagcaacccataa |
4321744 |
T |
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