View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_254 (Length: 239)
Name: NF9917A_low_254
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_254 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 41311027 - 41311253
Alignment:
| Q |
13 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
|
| Q |
113 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
|
| Q |
213 |
aatcagccaatgaatataaccattcaa |
239 |
Q |
| |
|
|| ||||||||||||| |||||||||| |
|
|
| T |
41311227 |
aaccagccaatgaatagaaccattcaa |
41311253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 43164710 - 43164931
Alignment:
| Q |
18 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
|
|
| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
|
| Q |
118 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
217 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| || |
|
|
| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
|
| Q |
218 |
gccaatgaatataaccattcaa |
239 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
43164910 |
gccaatgaatagaaccattcaa |
43164931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 30165883 - 30165677
Alignment:
| Q |
18 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
|
| Q |
118 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
217 |
Q |
| |
|
||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
|
| Q |
218 |
gccaatgaatataaccatt |
236 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
30165695 |
gccaatgaatagaaccatt |
30165677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 28180965 - 28181077
Alignment:
| Q |
116 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat |
215 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||| | |||| |||| || || ||||| |
|
|
| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac |
28181064 |
T |
|
| Q |
216 |
cagccaatgaata |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28181065 |
cagccaatgaata |
28181077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 30124981 - 30125160
Alignment:
| Q |
13 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
112 |
Q |
| |
|
|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
|
|
| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
|
| Q |
113 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
192 |
Q |
| |
|
||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatcc |
30125160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 30131068 - 30131150
Alignment:
| Q |
146 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaata |
228 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |||||||||||| || |||| || || ||||| ||||||||||||| |
|
|
| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaata |
30131150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 30120068 - 30120112
Alignment:
| Q |
146 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacat |
190 |
Q |
| |
|
||||||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacat |
30120112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
15 |
tgtgtattcttgcatcacccatatcttaagtgta |
48 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
| Q |
131 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
192 |
Q |
| |
|
||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc |
21426642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University