View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_258 (Length: 238)
Name: NF9917A_low_258
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_258 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 39578548 - 39578753
Alignment:
| Q |
14 |
gaagaatatcacaacattctaccatacatagatcttcatataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagac |
113 |
Q |
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| T |
39578548 |
gaagaaaatcacaacattctaccatacatagatcttcatataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagac |
39578647 |
T |
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| Q |
114 |
caacaaccattaactaaggggcgaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtccctt |
213 |
Q |
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| T |
39578648 |
caacaaccattaactaaggggggaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtccctt |
39578747 |
T |
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| Q |
214 |
gatttt |
219 |
Q |
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|||||| |
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| T |
39578748 |
gatttt |
39578753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 39542302 - 39542384
Alignment:
| Q |
136 |
gaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattt |
218 |
Q |
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| T |
39542302 |
gaaacaaggacaaaacagagaaatgaggtattgaaaaaacagctcatggagacacttgcgtgttgattgttgtaccttgattt |
39542384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 39574183 - 39574219
Alignment:
| Q |
182 |
tggagacacttgcgtgttgattgttgtcccttgattt |
218 |
Q |
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| T |
39574183 |
tggagacatttgcgtgttgattgttgtgccttgattt |
39574219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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