View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_261 (Length: 238)
Name: NF9917A_low_261
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_261 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52242685 - 52242900
Alignment:
| Q |
1 |
gttgttcagaataactataaaatctctccattcaaaatctggcgggaaattgttattgttatagcgaggaatggaacataacagaacagaacagaactga |
100 |
Q |
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| T |
52242685 |
gttgttcagaataactataaaatctctccattcaaaatctggcgggaaattgttattgttatagcgaggaatgg-----aatggaacagaacagaactga |
52242779 |
T |
|
| Q |
101 |
actgaactgagaggtttgtgagaaagaacaatgatgtcagtgaagagaattttgaaatgataataatttgaattgtcaccgaggacagagttaggtggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52242780 |
actgaactgagaggtttgtgagaaagaacaatgatgtcagtgaagagaattttgaaataataataatttgaattgtcaccaaggacagagttaggtggca |
52242879 |
T |
|
| Q |
201 |
atggaaatctagtagaaattg |
221 |
Q |
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|||||||||||||||||||| |
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| T |
52242880 |
ctggaaatctagtagaaattg |
52242900 |
T |
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