View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_262 (Length: 238)
Name: NF9917A_low_262
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_262 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 32724718 - 32724922
Alignment:
| Q |
19 |
gaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttattt |
118 |
Q |
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| T |
32724718 |
gaaacatgagaagacaagaatgatagagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttattt |
32724817 |
T |
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| Q |
119 |
gggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatggttcttatgtc |
218 |
Q |
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| T |
32724818 |
gggttaacaggctttttagaaaggtgttgaaggtaatggatgttaaaagattctttctcagcatttcatggttcagagaaaaaagtatggttcttatgtc |
32724917 |
T |
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| Q |
219 |
tagac |
223 |
Q |
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|||| |
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| T |
32724918 |
aagac |
32724922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 32723264 - 32723453
Alignment:
| Q |
20 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttg |
119 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32723264 |
aaacatgagaagacaggaaagatagagagatgatgggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttg |
32723363 |
T |
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| Q |
120 |
ggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
207 |
Q |
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| T |
32723364 |
agttataacatgtttttgagaaaggtgttgaaggtagtggatgttacaagattctttatcagcatttcatggttcagatgaaaaagtatg |
32723453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 4001942 - 4002081
Alignment:
| Q |
84 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatt |
183 |
Q |
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||||| |||| |||||||||| || |||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctcataatt |
4002041 |
T |
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| Q |
184 |
tcacggttcagagaaaaaagtatggttcttatgtctagac |
223 |
Q |
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| T |
4002042 |
tcatggtttagagaaaaaagtatggttcttatgcctagac |
4002081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 15719989 - 15720179
Alignment:
| Q |
20 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaa-tttttgttttgtatcaatggtgacacaagttattt |
118 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
15719989 |
aaacatgagaagacaagaaagatagagagatgatgggtgtacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttattt |
15720088 |
T |
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| Q |
119 |
gggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
207 |
Q |
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| T |
15720089 |
gggttataacaagtttttgagaaaggtgttgaaggtagtggatgttacaagattctttctcagtatttcatggttcagatgaaaaagtatg |
15720179 |
T |
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