View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_267 (Length: 236)
Name: NF9917A_low_267
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_267 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44952172 - 44951938
Alignment:
| Q |
1 |
gaaagagaagtatcaagtgaacatgcgtgttcctaagtaaaggtgtatttgataaatgtgcaatatgtatatcttaaatgaagcttacttctctatacac |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
44952172 |
gaaatagaagtatcaagtgaacatgcgtgtttctaagtaaatgtgtatttgataaatgtgcaatatgtatatcttaagtgaatcttacttctctatacac |
44952073 |
T |
|
| Q |
101 |
gatgggtcctataacatacgactaccataaatcctttatttttatgtatacttcttagtatttgtcttgattttttattataaaccatgtaactcagcca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44952072 |
gatgggtcctataacatacgactaccataaatcatttatttttatgtatacttcttagtatttgtcttgattttttattatacaccatgtaactcagcca |
44951973 |
T |
|
| Q |
201 |
ttcacccttcgttaacttagcactttaaatgttca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44951972 |
ttcacccttcgttaacttagcactttaaatgttca |
44951938 |
T |
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