View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_272 (Length: 233)
Name: NF9917A_low_272
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_272 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 11826888 - 11826662
Alignment:
| Q |
7 |
agttaagatctcatcatcgaaagtgcttgcatcaacacgatggaagtaaagaagcgaaactaaaggcaaaatggttcatcttagacctaactactagtta |
106 |
Q |
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| T |
11826888 |
agttaagatctcatcatcgaaagtgtttgcatcaacacgatggaagtaaagaagcgaaactaaaggcaaaatggttcatcttagacctaactactagtta |
11826789 |
T |
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| Q |
107 |
ggtcatagctgaaaaccctcaagatcttaacctatatggaagggcaactaatcatcctttggcaatttatgtatcgcatataaagatctcaaatatatag |
206 |
Q |
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| T |
11826788 |
ggtcatagctgaaaaccctcaagatcttaacctatatggaagggcaactaattatcctttggcaatttatgtatcgcatataaagatctcaaatatatag |
11826689 |
T |
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| Q |
207 |
aatagctactcgtgtgtacgcattaag |
233 |
Q |
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| T |
11826688 |
aatagctactcgtgtgtatgcattaag |
11826662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 197
Target Start/End: Complemental strand, 11840686 - 11840528
Alignment:
| Q |
45 |
gatggaagtaaagaagcgaaactaaaggcaaaatggttcatc---ttagacctaactactagttaggtcatagctgaaa---accctcaagatcttaacc |
138 |
Q |
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| T |
11840686 |
gatggaagcaaagaagcaaaattgaaggcaaaatagtgcttcaagttagacctagctacaagctaggtcatggttgaaagaaaccctcaagatcttaacc |
11840587 |
T |
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| Q |
139 |
tatatggaagggcaactaatcatcctttggcaatttatgtatcgcatataaagatctca |
197 |
Q |
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| T |
11840586 |
tataaggaagggcaaccaatgatcctttggcaatttatgtatcctatataaagatctca |
11840528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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