View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_280 (Length: 230)
Name: NF9917A_low_280
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_280 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0427 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 53726835 - 53727059
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53726835 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaggatacagcaggtccttctcctagtgatgga |
53726934 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaagaacaaaattgtgagttattagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
53726935 |
ggtaacagaacagcaagaactataagtttatcaggtagatgtttattcaggaattagaaaattggaggagaagaagaacaaaattaggagttattagtgt |
53727034 |
T |
|
| Q |
206 |
ggctttatatattttgttgctactg |
230 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
53727035 |
gactttatatattttgttgctactg |
53727059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 53731317 - 53731540
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
53731317 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaggatacagcaggtccttttcctagtgatgga |
53731416 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaagaacaaaattgtgagttattagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
53731417 |
ggtaacagaacagcaagaactataagtttatcaggtagatgtttattcaggaattagaaaattggaggagaagaagaacaaaattaggagttattagtgt |
53731516 |
T |
|
| Q |
206 |
ggctttatatattttgttgctact |
229 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
53731517 |
gactttatatattttgttgctact |
53731540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 42872060 - 42871942
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||| ||| || || || || || |||||| |||| ||||| |
|
|
| T |
42872060 |
agtattaacctgaggcgtcacgaagactgccattggaatttatctgcctcagagtgtgcaaattcctcagaattcaacatgttcttctcgtagttatgga |
42871961 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaa |
124 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
42871960 |
ggtaacagaacaacaagaa |
42871942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 19229666 - 19229888
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
19229666 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaagatacaacaggtccttctcctagtgatgga |
19229765 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaagaacaaaattgtgagttattagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
19229766 |
ggtaacagaacagcaagaactataagtttatcaggtagatgtttattcaggaattagaaaattggaggagaagaagaaccaagttgtgagttattagtgt |
19229865 |
T |
|
| Q |
206 |
ggctttatatattttgttgctac |
228 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19229866 |
ggctttatatattttgttgctac |
19229888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 23544690 - 23544472
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
23544690 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccacctcaatgtgcgcaaactccccaggatacagcagatccttctcttagtgatgga |
23544591 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaagaacaaaattgtgagttattagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
23544590 |
ggtaacagaacagcaagaactataagtttatcaagtagatgtttattcaggaattagaaaattgggggagaagaagaacaaaattgtgagttattagtgt |
23544491 |
T |
|
| Q |
206 |
ggctttatatattttgttg |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23544490 |
ggctttatatattttgttg |
23544472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 180
Target Start/End: Complemental strand, 14059053 - 14058879
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
14059053 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccctaggatacagcaggtccttctcctagtgatgga |
14058954 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaa |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
14058953 |
ggtaacagaacagcaagaactataagtttatcaggtagatgtttattcaagaattagaaaattggaggagaagaa |
14058879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 22462435 - 22462290
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||| |||||| |||||| |||||||||| ||| || ||||||||||||||| | ||||| |
|
|
| T |
22462435 |
agtattaacatgaggcgtcacgaggactgtctttggaatttatccgcctcagtgtgcggaaactccccaggattcaacaggtccttctcctaattatgga |
22462336 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttat |
151 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||||| | | |||||||| |
|
|
| T |
22462335 |
ggtaacaaaacatcaagaattataaatttatcaagcagatgtttat |
22462290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 26968934 - 26969108
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
26968934 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtacgcaaaatccccaggatacagcaggtccttctcctaatgatgga |
26969033 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaa |
180 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
26969034 |
ggtaacagaacatcaagaactataagtttatcaggtagatgtttattcaggaattagaagattggaggagaagaa |
26969108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 26973462 - 26973635
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
26973462 |
agtattaacctgaggcgtcacaaagactgtccttgga-tttatccgcctcaatgtgcgcaaactttccaggatacaacaggtccttctcctagtgatgga |
26973560 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaa |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26973561 |
ggtaacagaacagcaagaactataagtttatcaggtagatgtttattcaggaattagaaaattggaggagaagaa |
26973635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 7505103 - 7505276
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
7505103 |
agtattaacctgaggtgtcacgaagactgtccttgaaatttatccgcctcaatatgcgcaaactcgc-aggatacagcagatccttctcctagtgatgga |
7505201 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttattcaggaattagaaaattggaggaggagaa |
180 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
7505202 |
ggtaacagaacagcaagaactatcagtttatcaagtagatgtttattcatgaattagaaaattggaggagaagaa |
7505276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 38643761 - 38643890
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
38643761 |
agtattaacctgaggcgtcacgaagactgtccttgaaatttatccgcctcaatgtgcgcaaactccccaggatacagcaggtccttctcctaatgatgga |
38643860 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagttta |
135 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
38643861 |
ggtaacagaacaacaagaactataagttta |
38643890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 32791863 - 32791711
Alignment:
| Q |
42 |
aatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatggaggtaacagaacagcaagaactataagtttatcaggt |
141 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
32791863 |
aatttatccgtctcaatatgcgcaaactccccacgatacagtaggtccttctcctagtgatggaggtaacagaacaacaagaactataaatttatcaggt |
32791764 |
T |
|
| Q |
142 |
acatgtttattcaggaattagaaaattggaggaggagaagaacaaaattgtgag |
195 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |||| |||||| ||||||| |
|
|
| T |
32791763 |
agatgtttattcaggaattagaaaattgaaggagaagaa-aacaaagttgtgag |
32791711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 8263490 - 8263346
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||| ||| |||| |
|
|
| T |
8263490 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaattccccaggattcaacaggtccttctccaagttatggt |
8263391 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgttta |
150 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||| | ||||||| |
|
|
| T |
8263390 |
ggttacagaacagcaagaatgataattttatcaggcatatgttta |
8263346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 47204809 - 47204674
Alignment:
| Q |
45 |
ttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatggaggtaacagaacagcaagaactataagtttatcaggtaca |
144 |
Q |
| |
|
||||| |||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47204809 |
ttatccgcctcaatgtgcgcaaactctccagggtacaacaggtccttctcctagtgatggaggtaacagaacagcaagaactataagtttatcaggtaga |
47204710 |
T |
|
| Q |
145 |
tgtttattcaggaattagaaaattggaggaggagaa |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47204709 |
tgtttattcaggaattagaaaattggaggagaagaa |
47204674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 47204935 - 47204808
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
47204935 |
agtattaacctgaggcgtcacgaagactgtccttagaatttatccgcctcaatgtgcgcaaacttcccaggatacagcaggtccttctcctagtgatgga |
47204836 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtt |
133 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
47204835 |
ggtaacagaacagcaagaattataagtt |
47204808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 8353844 - 8353794
Alignment:
| Q |
90 |
ttctcctagtgatggaggtaacagaacagcaagaactataagtttatcagg |
140 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||| ||||| ||||||||| |
|
|
| T |
8353844 |
ttctcctagttatggaggtaacataacaacaagaattataaatttatcagg |
8353794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 19033779 - 19033897
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
19033779 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaggatacaacaggtccttctcctagtgatgga |
19033878 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaa |
124 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
19033879 |
ggtaacataacagcaagaa |
19033897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 38968555 - 38968437
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| ||||| | | ||| || ||| | |||||| |||| ||||| |
|
|
| T |
38968555 |
agtattaacctgaggcgtcacgaagactgtccttaaaatttatccgcctcagtgtgcgtaaactatctaggattcaacagatacttctcttagttatgga |
38968456 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaa |
124 |
Q |
| |
|
||||||||| || |||||| |
|
|
| T |
38968455 |
ggtaacagagcaacaagaa |
38968437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 28830757 - 28830868
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||| |||||||| || |||||| ||||||||||||| |||| |||| |||||||| ||||| || || | | | ||||||||||| ||||| |
|
|
| T |
28830757 |
agtattaacctaaggcgtcatgaggactgttcttggaatttatccacctccatgtacgcaaacttcccataattcaaccgattcttctcctagttatgga |
28830856 |
T |
|
| Q |
106 |
ggtaacagaaca |
117 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28830857 |
ggtaacagaaca |
28830868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 16085222 - 16085340
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
16085222 |
agtattaacctcaggcgtcacgaagactgtccttggaatttatccgcctcaatgtacgcaaactccccaggacacagcaggtccttctcctagtgatgga |
16085321 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaa |
124 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
16085322 |
ggtaacaaaacagcaagaa |
16085340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 14837200 - 14837329
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||| ||||||||| || |||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
14837200 |
agtattaacctgaggcatcatgaaggctgtcattggaatttgtccgcctcaatgtgcgcaaactctccaggatacatcagatccttctcctagtgatgga |
14837299 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagttta |
135 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |
|
|
| T |
14837300 |
ggtaacagaacaacaacaactataagttta |
14837329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 3627895 - 3628082
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||||||||||| || ||||||||||||||||| ||| ||| || ||||||||||||| ||| ||||| |
|
|
| T |
3627895 |
agtattaacttgaggcgtcaggaatactgtccttggaatttatccgcttcaatgtgcgcaaactctccaggattcaacaggtccttctccaagttatgga |
3627994 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaactataagtttatcaggtacatgtttat-tcaggaattagaaaattggaggaggagaagaacaaaattgtgag |
195 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||| | |||||||| ||||||| | ||||||||| ||| |||| |||||| ||||||| |
|
|
| T |
3627995 |
ggttacagaacagcaagaatgataattttatcaggcagatgtttatctcaggaagt--aaaattggaagagaagaa-aacaaagttgtgag |
3628082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 3640946 - 3640828
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||| || ||||| ||| ||||||| ||||| |
|
|
| T |
3640946 |
agtattaacctgaggcgtcacgaggactgtccttggaatttatcctcctcaatatgcgcaaactccccaggattcaacaggtacttatcctagttatgga |
3640847 |
T |
|
| Q |
106 |
ggtaacagaacagcaagaa |
124 |
Q |
| |
|
||||||||| || |||||| |
|
|
| T |
3640846 |
ggtaacagagcaacaagaa |
3640828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 16088145 - 16088255
Alignment:
| Q |
6 |
agtattaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatgga |
105 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
16088145 |
agtattaacctagggtgtcacgaagattgtccttggaatttatccacatcaatgtgcgcaaactcccc-ggatacagcaggtccctctcctaatgatgga |
16088243 |
T |
|
| Q |
106 |
ggtaacagaaca |
117 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16088244 |
ggtaacagaaca |
16088255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 5800 - 5627
Alignment:
| Q |
9 |
attaacctgaggcgtcacgaagactgtccttggaatttatctgcctcaatgtgcgcaaactccccatgatacagcaggtccttctcctagtgatggaggt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| || ||| || || ||| |||||||| | |||||||| |
|
|
| T |
5800 |
attaacctgaggcgtcacgaagactgtcattggaatttatccgcctcaatgtgcgctaactcctcaggattcaacatgtcattctcctaattatggaggt |
5701 |
T |
|
| Q |
109 |
aacagaacagcaagaactataagtttatcaggtacatgttt-attcaggaattag-aaaattggaggaggagaa |
180 |
Q |
| |
|
|||||||| || ||| |||| || |||||||| |||||| | ||||||||||| ||||||||||||| |||| |
|
|
| T |
5700 |
tacagaacaacacgaatgataatttgatcaggtagatgtttaactcaggaattagaaaaattggaggagaagaa |
5627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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