View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_283 (Length: 230)
Name: NF9917A_low_283
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_283 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27445961 - 27445737
Alignment:
| Q |
1 |
aatgagtatatatagatagatctacaagtttttgtggaaacaattccttgatggattctgtggttgtgttttgggctattatttcataagagagaaaggc |
100 |
Q |
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| T |
27445961 |
aatgagtatatatagatagatctacaagtttttgtggaaacaattccttgatggattctgtggttgtgttttgggctattatttcataagagagaaaggc |
27445862 |
T |
|
| Q |
101 |
caatgagatgtcacatggtattgtttcatgattatctaattatatccagga-ttacttcagacttgaaaactcaggccaaccgatatgctaataatccca |
199 |
Q |
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| T |
27445861 |
caatgagatgtcacatggtattgtttcatgattgtctaattatatccaggatttacttcagacttgaaaactcaggccaaccgatatgctaataatccca |
27445762 |
T |
|
| Q |
200 |
ctcttctagcagacaagctcaaaac |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
27445761 |
ctcttctagcagacaagctcaaaac |
27445737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 27559621 - 27559734
Alignment:
| Q |
68 |
gttttgggctattatttcataagagagaaaggccaatgagatgtcacatggta-ttgtttcatgattatctaattatatccaggattacttcagacttga |
166 |
Q |
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||||||||||||||||| |||||||| || ||||||||||| ||||||||||| || ||||||| || | ||||||||| ||| ||||||||||||| | |
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| T |
27559621 |
gttttgggctattatttgataagagataagggccaatgagaggtcacatggtatttttttcatggttttttaattatataaagggttacttcagacttaa |
27559720 |
T |
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| Q |
167 |
aaactcaggccaac |
180 |
Q |
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||||||| |||||| |
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| T |
27559721 |
aaactcatgccaac |
27559734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 10397517 - 10397371
Alignment:
| Q |
33 |
tgtggaaacaattccttgatggattctgtggttgtgttttgggctattatttcataagagagaaaggccaatgagatgtcacatggtattgtttcatgat |
132 |
Q |
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|||||||||||||| || || ||| |||||||||||| ||||||||||| |||||||| || ||||||||||| |||| ||||||| ||| ||||| |
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| T |
10397517 |
tgtggaaacaattctctgctgaattgtgtggttgtgttgctggctattatttgataagagataagggccaatgagaagtcatgtggtattatttaatgat |
10397418 |
T |
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| Q |
133 |
tatctaattatatccaggattacttcagacttgaaaactcaggccaa |
179 |
Q |
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| T |
10397417 |
tgtttaattatatcaacgattacggcagactataaaactcatgccaa |
10397371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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