View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_287 (Length: 230)
Name: NF9917A_low_287
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_287 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4338191 - 4338414
Alignment:
| Q |
1 |
gttggggcacaatctgagcctgctaagaggattgtttgtgctgcttctagtggtgttctggctgttacttttgcggttgttaggatgtatcttggttggg |
100 |
Q |
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| T |
4338191 |
gttggggcacaatatgagcctgctaagaggattgtttgtgctgcttctagtggtgttctggctgttacttttgcggttgttaggatgtatcttggttggg |
4338290 |
T |
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| Q |
101 |
cttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctctactttttaatcttatgtctaagattataatttataatcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338291 |
cttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctctactttttaatcttatgtctaagattataatttataatcatg |
4338390 |
T |
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| Q |
201 |
gaaataaacaaaaatgaaagtttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4338391 |
gaaataaacaaaaatgaaagtttt |
4338414 |
T |
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