View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_288 (Length: 230)

Name: NF9917A_low_288
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_288
NF9917A_low_288
[»] scaffold0438 (2 HSPs)
scaffold0438 (26-209)||(12350-12537)
scaffold0438 (72-209)||(9236-9373)
[»] chr8 (4 HSPs)
chr8 (26-209)||(26342189-26342376)
chr8 (26-209)||(26294858-26295045)
chr8 (26-209)||(26308115-26308302)
chr8 (40-155)||(8346921-8347036)
[»] chr3 (10 HSPs)
chr3 (28-146)||(1205737-1205855)
chr3 (26-122)||(1188678-1188774)
chr3 (26-91)||(1206321-1206386)
chr3 (26-155)||(5358764-5358891)
chr3 (141-208)||(8031884-8031951)
chr3 (26-96)||(147612-147683)
chr3 (81-146)||(1303311-1303376)
chr3 (82-146)||(1188107-1188171)
chr3 (61-122)||(1301246-1301307)
chr3 (179-209)||(5358917-5358947)


Alignment Details
Target: scaffold0438 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 12537 - 12350
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 121  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12537 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaagga 12438  T
Q  122 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 209  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  12437 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 12350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 9373 - 9236
Alignment:
Q  72 aagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaattcaagagact 171  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9373 aagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaaatctagagact 9274  T
Q  172 attctagaaaaatgcaaaggaattagacacaagattaa 209  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9273 attctagaaaaatgcaaaggaattatacacaagattaa 9236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 26342376 - 26342189
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 121  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26342376 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaagga 26342277  T
Q  122 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 209  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26342276 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26342189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 26295045 - 26294858
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 121  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26295045 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaagga 26294946  T
Q  122 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 209  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26294945 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26294858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 26308302 - 26308115
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 121  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26308302 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaagga 26308203  T
Q  122 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 209  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26308202 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26308115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 8347036 - 8346921
Alignment:
Q  40 tcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaa 139  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||| ||||||    | ||  |||||||||||||||  ||| | ||||| ||||||||    
T  8347036 tcatttttattttaccagacaagtaaatcattaagaaaaaagaaagctaatccaacagtcagcatcttcaataatttagagacaatatctcgcacaccaa 8346937  T
Q  140 acagaaagtcaaagca 155  Q
    |||||||  |||||||    
T  8346936 acagaaaaccaaagca 8346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 1205855 - 1205737
Alignment:
Q  28 caaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacat 127  Q
    ||||||||||||| ||||||| || |||||||||||||||||| || ||| | |||| |||||||||  |||||||||| ||||||||||||| ||| ||    
T  1205855 caaacaagctgttgatttttatttaaccagacaaataaatcatcaataaataagaaatttaatccttcagacaatatctccaataatttaaggtctatat 1205756  T
Q  128 ctcacacaccaaacagaaa 146  Q
    |||||| ||||||||||||    
T  1205755 ctcacataccaaacagaaa 1205737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 1188774 - 1188678
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggac 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||  |||||| ||||||| | |||||||||    
T  1188774 ctcaaacgagctgttcatttttagtttaccagacaaataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaaaagtttaaggac 1188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 1206386 - 1206321
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatc 91  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  1206386 ctcaaacaagttgttcatttttagtttaccagacaaataaatcatcaagaaaaaagaaagttaatc 1206321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 5358764 - 5358891
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactac 125  Q
    ||||||||||||| | ||||||| |||||||||||| |||||||| ||||| || ||||| ||||| ||  | ||| |||||||| ||||||| |||||     
T  5358764 ctcaaacaagctggtaattttta-tttaccagacaagtaaatcatcaagaacaaagaaagctaatcattcag-caacatcttcaacaatttaaagactat 5358861  T
Q  126 atctcacacaccaaacagaaagtcaaagca 155  Q
    ||||||||||||||||||||| ||||||||    
T  5358862 atctcacacaccaaacagaaaatcaaagca 5358891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 8031884 - 8031951
Alignment:
Q  141 cagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagatta 208  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8031884 cagacagtcaaagctataaattcacaagactattctagaaaaatgcaaaggaattagacacaagatta 8031951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 147683 - 147612
Alignment:
Q  26 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaag-aaaaatgaaagttaatcctttt 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  147683 ctcaaacaagcttttcatttttagtttaccagacaaataaatcatcaagaaaaaaataaagttaatcctttt 147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 1303311 - 1303376
Alignment:
Q  81 gaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 146  Q
    |||| |||||||||  |||||||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  1303311 gaaatttaatccttcagacaatatctccaataatttaaggtctatatctcacataccaaacagaaa 1303376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 1188171 - 1188107
Alignment:
Q  82 aaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 146  Q
    |||||||||||||  ||||| |||| ||||||| ||||| ||| |||||||||||||||||||||    
T  1188171 aaagttaatccttcagacaacatctccaataatataaggtctagatctcacacaccaaacagaaa 1188107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 1301246 - 1301307
Alignment:
Q  61 aataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggac 122  Q
    |||||||||| |||||||| ||||||||||| ||  |||||| |||||||||| ||||||||    
T  1301246 aataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaataacttaaggac 1301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 5358917 - 5358947
Alignment:
Q  179 aaaaatgcaaaggaattagacacaagattaa 209  Q
    |||||||||||||||||||||||||||||||    
T  5358917 aaaaatgcaaaggaattagacacaagattaa 5358947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University