View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_29 (Length: 410)
Name: NF9917A_low_29
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 185 - 404
Target Start/End: Original strand, 27915071 - 27915288
Alignment:
| Q |
185 |
tagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattttc |
284 |
Q |
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| T |
27915071 |
tagtaacatatattttataattcaataaaacggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattattttc |
27915170 |
T |
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| Q |
285 |
cttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaaccagttaccgacatatactagtactcag |
384 |
Q |
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| T |
27915171 |
cttctggttgccattttcctcgatcttacaatattgtgggaacactgacaaagtgcaccatgaaccac--aaccatttaccgacatatgttagtactcag |
27915268 |
T |
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| Q |
385 |
atttttcttaataattttag |
404 |
Q |
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|||||||||||||||||||| |
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| T |
27915269 |
atttttcttaataattttag |
27915288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 27914648 - 27914817
Alignment:
| Q |
1 |
aacaatatacctggatcgtgcgaagaatctagtatatatatctgcaagtggccaatcaagtactctttcatgcaagtatccatgaccaatgtattaatta |
100 |
Q |
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| T |
27914648 |
aacaatatagctggatcgtgcgaagaatctagtatatatatctgcaagtagccaatcacgtactctttcttgcaagtttccatgaccaatgtattaatta |
27914747 |
T |
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| Q |
101 |
tttaagtacgtaatacgtatgttcttgtcctccgacccctactcaataaacagacaatgaaagtgtgttt |
170 |
Q |
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| T |
27914748 |
tttaagtacgtaatacgtatgttcttgtcctcagacccctactctctaaacagacaataaaagtgtgttt |
27914817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 183 - 359
Target Start/End: Original strand, 27909681 - 27909857
Alignment:
| Q |
183 |
actagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattt |
282 |
Q |
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| T |
27909681 |
actagtaacatatattttataattcaataaaatggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattatat |
27909780 |
T |
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| Q |
283 |
tccttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaacca |
359 |
Q |
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| T |
27909781 |
cccttctgattgccattttccttgatcttacaatatcgtgggaacacagacaaagtgcatcatgaaccacaaaacca |
27909857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 27907919 - 27907964
Alignment:
| Q |
3 |
caatatacctggatcgtgcgaagaatctagtatatatatctgcaag |
48 |
Q |
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| T |
27907919 |
caatatagctgaatcgtgcgaaggatctagtatgtatatctgcaag |
27907964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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