View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_296 (Length: 230)
Name: NF9917A_low_296
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_296 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3036612 - 3036837
Alignment:
| Q |
1 |
tatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctg |
100 |
Q |
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| T |
3036612 |
tatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctg |
3036711 |
T |
|
| Q |
101 |
ggacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaac |
199 |
Q |
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| T |
3036712 |
ggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaac |
3036811 |
T |
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| Q |
200 |
acaaatgccaaagatgaggtatggtt |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3036812 |
acaaatgccaaagatgaggtatggtt |
3036837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 16863363 - 16863584
Alignment:
| Q |
5 |
ggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataa-gtgtcacgagctggga |
103 |
Q |
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| T |
16863363 |
ggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctggga |
16863462 |
T |
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| Q |
104 |
cactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaa |
203 |
Q |
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| T |
16863463 |
cactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaa |
16863562 |
T |
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| Q |
204 |
atgccaaagatgaggtatggtt |
225 |
Q |
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| T |
16863563 |
atgccaaagatgaggtatggtt |
16863584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
37 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
136 |
Q |
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| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
137 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
225 |
Q |
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| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 20529064 - 20529205
Alignment:
| Q |
84 |
ataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggc |
183 |
Q |
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||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||| |
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| T |
20529064 |
ataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggc |
20529163 |
T |
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| Q |
184 |
tcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
225 |
Q |
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|||| |||| |||||||||||| |||||||||||||||||| |
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| T |
20529164 |
tcaaacatgattgaacacaaatgtcaaagatgaggtatggtt |
20529205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 40612949 - 40612799
Alignment:
| Q |
75 |
ttgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgct |
174 |
Q |
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||||||||| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| || |
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| T |
40612949 |
ttgagtgttttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattact |
40612850 |
T |
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| Q |
175 |
tctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
225 |
Q |
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| T |
40612849 |
tcttatggcccaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
40612799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 40613002 - 40612968
Alignment:
| Q |
10 |
tggtagaggaagagggcgttcaggtgctagaggaa |
44 |
Q |
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| T |
40613002 |
tggtagaggaagaggacgttcaggtgctagaggaa |
40612968 |
T |
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