View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_297 (Length: 230)
Name: NF9917A_low_297
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_297 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 46464851 - 46465032
Alignment:
| Q |
49 |
ttttaaaaatagcatttgaggtttccgatacaatgtatgtcttcatgcacctctgtcagactagtaattacgatgcaacgacaagatcactgacattttt |
148 |
Q |
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| T |
46464851 |
ttttaaaaatagcatttgagatttccgatacaatgtatgtcttcatgcacctctgtcagactagtaattacgatgcaacgacaagatcactgacattttt |
46464950 |
T |
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| Q |
149 |
taaaataataattgaggtttccgatgtaatgtatgtattaattcacttttgtaagactagtaattacaatgcatattcttcg |
230 |
Q |
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| T |
46464951 |
taaaataacaattgaggtttccgatgtaatgtatgtcttaattcactcttgtaagactagtaattacaatgcatatttttcg |
46465032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 46464934 - 46465023
Alignment:
| Q |
36 |
agattactgacagttttaaaaatagcatttgaggtttccgatacaatgtatgtcttcatgcacctctgtcagactagtaattacgatgca |
125 |
Q |
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| T |
46464934 |
agatcactgacattttttaaaataacaattgaggtttccgatgtaatgtatgtcttaattcactcttgtaagactagtaattacaatgca |
46465023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 46464738 - 46464817
Alignment:
| Q |
142 |
cattttttaaaataataattgaggtttccgatgtaatgtatgtattaattcacttttgtaagactagtaattacaatgca |
221 |
Q |
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| T |
46464738 |
cattttttaaaataagaaatgagatttccgatgcaatgtatgtcttaatgtacctttatcaaactattaattacaatgca |
46464817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 46464824 - 46464927
Alignment:
| Q |
119 |
cgatgcaacgacaagatcact-gacattttttaaaataataattgaggtttccgatgtaatgtatgtattaattcacttttgtaagactagtaattacaa |
217 |
Q |
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| T |
46464824 |
cgatgcaacgataagatcacttgatatttttaaaaatagcatttgagatttccgatacaatgtatgtcttcatgcacctctgtcagactagtaattacga |
46464923 |
T |
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| Q |
218 |
tgca |
221 |
Q |
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| T |
46464924 |
tgca |
46464927 |
T |
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