View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_301 (Length: 230)
Name: NF9917A_low_301
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_301 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 5823787 - 5823564
Alignment:
| Q |
7 |
ttttgaagctctgattcgtctgttttatccatatcaatactcaacaacacattctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
106 |
Q |
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| T |
5823787 |
ttttgaagctccgattcgtctgttttatccgaatcgatactcaacagcacgttctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
5823688 |
T |
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| Q |
107 |
ttacttgaagaatatcaccaactttgtaaagacaaagaccagagtaagtagttataataaattcgtaaaatttaccaatttccacatcaacaaggtctac |
206 |
Q |
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| T |
5823687 |
ttacttgaagaatatcaccaactttgtaacgacaaagaccagaataagtagttataataaattcgtaaaatttaccaatttccacatcaacaaggtctac |
5823588 |
T |
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| Q |
207 |
tagttttggaggtgactcgtcaag |
230 |
Q |
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| T |
5823587 |
tagttttggaggtgactcgtcaag |
5823564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 5832252 - 5832466
Alignment:
| Q |
7 |
ttttgaagctctgattcgtctgttttatccatatcaatactcaacaacacattctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
106 |
Q |
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| T |
5832252 |
ttttgaagctccgattcgtctgttttatccgaatcgatactcaacaacacgttctttcgcctcacgaatttgaactgaggatcagaattatggaatccat |
5832351 |
T |
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| Q |
107 |
ttacttgaagaatatcaccaactttgtaaagacaaagaccagagtaagtagttataataaattcgtaaaatttaccaatttccacatcaacaaggtctac |
206 |
Q |
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| T |
5832352 |
tgacttgaagaatatcaccaactctgtaacggcaaaaaccggaataagttgtgattacaagctcataaaatttaccaatttggacatcagcaaggtctac |
5832451 |
T |
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| Q |
207 |
tagttttggaggtga |
221 |
Q |
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| T |
5832452 |
tagctttggaggtga |
5832466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 78554 - 78426
Alignment:
| Q |
7 |
ttttgaagctctgattcgtctgttttatccatatcaatactcaacaacacattctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
106 |
Q |
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||||| |||||||| || |||||||||||| ||||||||| | ||||||||||||||| | ||||| | ||||||||| |||||||||| || || | |
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| T |
78554 |
ttttgtagctctgactcatctgttttatccgaatcaatactaagcaacacattctttcgacgcacaaaatggaattgtggtgttgagttatgaaacccgg |
78455 |
T |
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| Q |
107 |
ttacttgaagaatatcaccaactttgtaa |
135 |
Q |
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| T |
78454 |
tgacacggagaatgtcaccaactctgtaa |
78426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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