View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_303 (Length: 229)
Name: NF9917A_low_303
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_303 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 52763652 - 52763865
Alignment:
| Q |
1 |
aatttttcattaataaggggtc-caatctccttcgttattagcgtatttaatttgacatgagaaagttcctttgaatgtttgtgtttttatttcgtgtat |
99 |
Q |
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| T |
52763652 |
aatttttcattaataaggggtcacaatctccttccttattagcgtatttaatttgacatgagaaagttcctttgaatgtttgtgtttttatttcgtgtat |
52763751 |
T |
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| Q |
100 |
tcttcacaatcggattcctaaccaaggataatcttttcatacgaggcatcatttaccagaattcaaaactttgtgttagtggttgtggcaatattggcaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52763752 |
tcttcacaatcggattcctaaccaaggataatcttttcatacgaggcatcatttaccagaattcaaaactttgtgttagtggttgtggcaatattggcaa |
52763851 |
T |
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| Q |
200 |
atcatattttcatt |
213 |
Q |
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|||||||||||||| |
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| T |
52763852 |
atcatattttcatt |
52763865 |
T |
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