View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_309 (Length: 229)

Name: NF9917A_low_309
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_309
NF9917A_low_309
[»] chr8 (14 HSPs)
chr8 (91-214)||(26295390-26295513)
chr8 (91-214)||(26308647-26308770)
chr8 (91-214)||(26342721-26342843)
chr8 (3-94)||(26343277-26343371)
chr8 (118-188)||(44132870-44132940)
chr8 (111-160)||(20896212-20896261)
chr8 (33-94)||(26295959-26296020)
chr8 (33-94)||(26309216-26309277)
chr8 (123-158)||(16467628-16467663)
chr8 (123-157)||(33938620-33938654)
chr8 (123-184)||(4834971-4835032)
chr8 (123-184)||(6261079-6261140)
chr8 (125-158)||(16499836-16499869)
chr8 (125-158)||(16508761-16508794)
[»] chr5 (8 HSPs)
chr5 (91-193)||(33953125-33953227)
chr5 (123-185)||(19824613-19824675)
chr5 (123-185)||(22029850-22029912)
chr5 (117-161)||(17250491-17250535)
chr5 (118-160)||(9956631-9956673)
chr5 (123-161)||(31882600-31882638)
chr5 (123-160)||(2651651-2651688)
chr5 (125-161)||(18623610-18623646)
[»] scaffold0438 (2 HSPs)
scaffold0438 (91-214)||(12882-13004)
scaffold0438 (3-94)||(13438-13532)
[»] chr1 (16 HSPs)
chr1 (118-188)||(19431387-19431457)
chr1 (111-193)||(3950287-3950369)
chr1 (123-184)||(48914986-48915047)
chr1 (123-184)||(48915377-48915438)
chr1 (123-158)||(27032326-27032361)
chr1 (123-158)||(27907732-27907767)
chr1 (123-158)||(48843405-48843440)
chr1 (123-158)||(51748581-51748616)
chr1 (118-188)||(11872185-11872255)
chr1 (125-163)||(17923857-17923895)
chr1 (118-159)||(17368422-17368463)
chr1 (123-156)||(19456339-19456372)
chr1 (123-160)||(24671185-24671222)
chr1 (123-160)||(48915200-48915237)
chr1 (125-161)||(15106239-15106275)
chr1 (117-161)||(46325614-46325658)
[»] chr3 (9 HSPs)
chr3 (105-194)||(16013499-16013588)
chr3 (125-184)||(39485471-39485530)
chr3 (123-184)||(10688637-10688698)
chr3 (123-158)||(4037170-4037205)
chr3 (123-158)||(11233535-11233570)
chr3 (118-161)||(20345075-20345118)
chr3 (123-158)||(39994220-39994255)
chr3 (123-158)||(49279518-49279553)
chr3 (127-184)||(47548869-47548926)
[»] chr2 (12 HSPs)
chr2 (123-184)||(32832594-32832655)
chr2 (123-184)||(39729015-39729076)
chr2 (123-184)||(41069674-41069735)
chr2 (117-160)||(8209316-8209359)
chr2 (123-160)||(11226175-11226212)
chr2 (123-158)||(3496805-3496840)
chr2 (123-158)||(15141909-15141944)
chr2 (117-184)||(16401124-16401191)
chr2 (123-158)||(19037073-19037108)
chr2 (127-160)||(6752099-6752132)
chr2 (123-160)||(23395962-23395999)
chr2 (123-160)||(36562765-36562802)
[»] chr6 (12 HSPs)
chr6 (128-188)||(457683-457743)
chr6 (118-188)||(6793518-6793588)
chr6 (125-193)||(8585733-8585801)
chr6 (118-186)||(24226082-24226150)
chr6 (117-193)||(26847163-26847239)
chr6 (123-158)||(7506661-7506696)
chr6 (123-158)||(9928290-9928325)
chr6 (123-158)||(22469728-22469763)
chr6 (118-161)||(28067336-28067379)
chr6 (118-188)||(512767-512837)
chr6 (123-157)||(6139347-6139381)
chr6 (123-163)||(3037396-3037436)
[»] chr4 (14 HSPs)
chr4 (111-163)||(30643614-30643666)
chr4 (127-193)||(44015404-44015470)
chr4 (118-161)||(50041838-50041881)
chr4 (118-161)||(50049060-50049103)
chr4 (123-160)||(46079365-46079402)
chr4 (125-160)||(31455919-31455954)
chr4 (117-160)||(53176862-53176905)
chr4 (118-160)||(33913973-33914015)
chr4 (118-188)||(36498596-36498666)
chr4 (118-188)||(52198372-52198442)
chr4 (123-160)||(29544187-29544224)
chr4 (123-184)||(52673199-52673260)
chr4 (117-157)||(5052111-5052151)
chr4 (131-187)||(19473049-19473105)
[»] chr7 (16 HSPs)
chr7 (127-184)||(37685191-37685248)
chr7 (122-185)||(42971643-42971706)
chr7 (117-163)||(43368508-43368554)
chr7 (123-175)||(33884053-33884105)
chr7 (119-159)||(42691095-42691135)
chr7 (123-158)||(16876743-16876778)
chr7 (123-158)||(18867954-18867989)
chr7 (123-158)||(23185929-23185964)
chr7 (117-156)||(30061171-30061210)
chr7 (123-158)||(34328134-34328169)
chr7 (117-184)||(40591038-40591105)
chr7 (123-158)||(46425344-46425379)
chr7 (123-184)||(2628437-2628498)
chr7 (127-184)||(11369056-11369113)
chr7 (118-163)||(17248716-17248761)
chr7 (117-161)||(19699881-19699925)
[»] scaffold0289 (1 HSPs)
scaffold0289 (127-160)||(20318-20351)
[»] scaffold0085 (1 HSPs)
scaffold0085 (131-188)||(31608-31665)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 26295513 - 26295390
Alignment:
Q  91 tgcatttgcttgacaatcattcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaa 190  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||| |    
T  26295513 tgcatttgcatgacaatcattcttagccaataattctctttcatctaaataatttactttgatcattcatccaccgttctccctcatctaaaatacacta 26295414  T
Q  191 atgctgtcaatgacgactaaaact 214  Q
    |||  ||| |||| | ||||||||    
T  26295413 atgtcgtcgatgatgcctaaaact 26295390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 26308770 - 26308647
Alignment:
Q  91 tgcatttgcttgacaatcattcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaa 190  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||| |    
T  26308770 tgcatttgcatgacaatcattcttagccaataattctctttcatctaaataatttactttgatcattcatccaccgttctccctcatctaaaatacacta 26308671  T
Q  191 atgctgtcaatgacgactaaaact 214  Q
    |||  ||| |||| | ||||||||    
T  26308670 atgtcgtcgatgatgcctaaaact 26308647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 26342843 - 26342721
Alignment:
Q  91 tgcatttgcttgacaatcattcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaa 190  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||| |    
T  26342843 tgcatttgcatgacaatcattcttagccaataattctctttcatctaaataatttac-ttgatcattcatccaccgttctctctcatctaaaatacacta 26342745  T
Q  191 atgctgtcaatgacgactaaaact 214  Q
    |||  ||| |||| | ||||||||    
T  26342744 atgtcgtcgatgatgcctaaaact 26342721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 26343371 - 26343277
Alignment:
Q  3 agaagcaaagacgccaagtagaag---cagacatttgacaatttaattaatcaaagaaatcatagttgataaaatctcacaaggtggagaatgca 94  Q
    ||||||||||| || |||||||||   || || |||| |||||||||||||||| |||||||||||  ||||||||||||||| |||||| ||||    
T  26343371 agaagcaaagatgctaagtagaagaaacaaacctttgccaatttaattaatcaaggaaatcatagtcaataaaatctcacaagatggagactgca 26343277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 44132940 - 44132870
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    |||||||||||||||||| |||||||||| |||||||||||||| | | || | |||| ||||||||||||    
T  44132940 caataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaatacac 44132870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 20896261 - 20896212
Alignment:
Q  111 tcttagtcaataattctctctcatctaaataatttactttaatcattcat 160  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  20896261 tcttaatcaatcattctctctcatctaaataatttattttaatcattcat 20896212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 26296020 - 26295959
Alignment:
Q  33 tttgacaatttaattaatcaaagaaatcatagttgataaaatctcacaaggtggagaatgca 94  Q
    |||| |||||||||||||| | |||||||||||  ||||||||||||||| |||||| ||||    
T  26296020 tttgccaatttaattaatccaggaaatcatagtcaataaaatctcacaagatggagactgca 26295959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 26309277 - 26309216
Alignment:
Q  33 tttgacaatttaattaatcaaagaaatcatagttgataaaatctcacaaggtggagaatgca 94  Q
    |||| |||||||||||||| | |||||||||||  ||||||||||||||| |||||| ||||    
T  26309277 tttgccaatttaattaatccaggaaatcatagtcaataaaatctcacaagatggagactgca 26309216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 16467628 - 16467663
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  16467628 attctctctcatctaaataatttagtttaatcattc 16467663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 33938654 - 33938620
Alignment:
Q  123 attctctctcatctaaataatttactttaatcatt 157  Q
    |||||||||||||||||||||||| ||||||||||    
T  33938654 attctctctcatctaaataatttattttaatcatt 33938620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 4835032 - 4834971
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||||| ||| |||||||||||| ||||||||||||| || | |||| |||| ||||||||    
T  4835032 attctctttcacctaaataatttattttaatcattcattcatcattctctctcatctaaaat 4834971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 6261079 - 6261140
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||||||| || ||| ||||||| ||  |||| |||| ||||||||    
T  6261079 attctctctcatctaaataatttatttgaattattcatcaactattctttctcatctaaaat 6261140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 16499869 - 16499836
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||| |||||||||||    
T  16499869 tctctctcatctaaataatttagtttaatcattc 16499836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 16508794 - 16508761
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||| |||||||||||    
T  16508794 tctctctcatctaaataatttagtttaatcattc 16508761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 33953125 - 33953227
Alignment:
Q  91 tgcatttgcttgacaatcattcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaa 190  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||| |||||||||||| |    
T  33953125 tgcatttgcacgacaatcattcttagtcaataattctctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaatacacta 33953224  T
Q  191 atg 193  Q
    |||    
T  33953225 atg 33953227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 19824613 - 19824675
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaata 185  Q
    |||||||||||||||||||||||| |||||||||||||| | | |||| |||| |||||||||    
T  19824613 attctctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaata 19824675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 22029912 - 22029850
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaata 185  Q
    ||||| ||||||| |||||||||| |||||||||||||||| | |||| |||| |||||||||    
T  22029912 attctatctcatccaaataatttattttaatcattcatccaacattctctctcatctaaaata 22029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 17250535 - 17250491
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatc 161  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||    
T  17250535 tcaatcattttctctcatcaaaataatttactttaatcattcatc 17250491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 9956631 - 9956673
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||| |||||||||| |||||||| ||||    
T  9956631 caataattctctctcatcaaaataatttattttaatcactcat 9956673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 31882600 - 31882638
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatc 161  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  31882600 attctctctcatctaaataatttattttaattattcatc 31882638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 2651651 - 2651688
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  2651651 attctatctcatctaaataatttattttaatcattcat 2651688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 18623646 - 18623610
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattcatc 161  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  18623646 tctctcttatctaaataatttattttaatcattcatc 18623610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 13004 - 12882
Alignment:
Q  91 tgcatttgcttgacaatcattcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaa 190  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||| |    
T  13004 tgcatttgcatgacaatcattcttagccaataattctctttcatctaaataatttac-ttgatcattcatccaccgttctctctcatctaaaatacacta 12906  T
Q  191 atgctgtcaatgacgactaaaact 214  Q
    |||  ||| |||| | ||||||||    
T  12905 atgtcgtcgatgatgcctaaaact 12882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 13532 - 13438
Alignment:
Q  3 agaagcaaagacgccaagtagaag---cagacatttgacaatttaattaatcaaagaaatcatagttgataaaatctcacaaggtggagaatgca 94  Q
    ||||||||||| || |||||||||   || || |||| |||||||||||||||| |||||||||||  ||||||||||||||| |||||| ||||    
T  13532 agaagcaaagatgctaagtagaagaaacaaacctttgccaatttaattaatcaaggaaatcatagtcaataaaatctcacaagatggagactgca 13438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 19431457 - 19431387
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| | |||| |||| ||||||||||||    
T  19431457 caatcattctctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaatacac 19431387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 3950369 - 3950287
Alignment:
Q  111 tcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaaatg 193  Q
    ||||| ||||| ||||||| ||||| |||||||||| |||||||||||||| | | |||| |||| |||||||| ||| ||||    
T  3950369 tcttaatcaattattctctttcatcaaaataatttattttaatcattcatcgatcattctctctcatctaaaatgcaccaatg 3950287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 48915047 - 48914986
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||||||||||| |||||||||| ||||||||||||| || | |||| |||| ||||||||    
T  48915047 attctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48914986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 48915438 - 48915377
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||||||||||| |||||||||| ||||||||||||| || | |||| |||| ||||||||    
T  48915438 attctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48915377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 27032361 - 27032326
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  27032361 attctctctcatctaaataatttattttaatcattc 27032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 27907732 - 27907767
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  27907732 attctctctcatctaaataatttattttaatcattc 27907767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 48843405 - 48843440
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  48843405 attctctctcatctaaataatttattttaatcattc 48843440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 51748581 - 51748616
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  51748581 attctctctcatctaaataatttattttaatcattc 51748616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 11872255 - 11872185
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    |||||||||||||||||| |||||||||| | ||||||||||  || | |||| | || ||||||||||||    
T  11872255 caataattctctctcatcaaaataatttattataatcattcaatcatcattctctttcatctaaaatacac 11872185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 17923857 - 17923895
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattcatcca 163  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  17923857 tctctctcatctaaataatttattttaattattcatcca 17923895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 17368463 - 17368422
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattca 159  Q
    |||||||||||||||||| |||||||||| |||||| |||||    
T  17368463 caataattctctctcatcaaaataatttattttaattattca 17368422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 19456372 - 19456339
Alignment:
Q  123 attctctctcatctaaataatttactttaatcat 156  Q
    |||||||||||||||||||||||| |||||||||    
T  19456372 attctctctcatctaaataatttattttaatcat 19456339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 24671185 - 24671222
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  24671185 attctctctcatttaaataatttattttaatcattcat 24671222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 48915237 - 48915200
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  48915237 attctctctcatcaaaataatttattttaatcattcat 48915200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 15106239 - 15106275
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattcatc 161  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  15106239 tctctctcatgtaaataatttattttaatcattcatc 15106275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 46325658 - 46325614
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatc 161  Q
    ||||| ||||||||||||| |||||| ||| ||||||||||||||    
T  46325658 tcaatcattctctctcatcaaaataacttattttaatcattcatc 46325614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 16013588 - 16013499
Alignment:
Q  105 aatcattcttagtcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaaatgc 194  Q
    |||| |||||| ||||||||||  | |||||||||||||||||||||||||||||||||  ||||| |||  |||||||||||| |||||    
T  16013588 aatctttcttaatcaataattccttgtcatctaaataatttactttaatcattcatccattgttctctctgatctaaaatacactaatgc 16013499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 39485530 - 39485471
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||||| |||||||||||||||| | |||| |||| ||||||||    
T  39485530 tctctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaat 39485471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 10688637 - 10688698
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||||||| ||||||||||||| || | |||| |||| ||||||||    
T  10688637 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 10688698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 4037170 - 4037205
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  4037170 attctctctcatctaaataatttattttaatcattc 4037205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 11233535 - 11233570
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  11233535 attctctctcatctaaataatttattttaatcattc 11233570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 20345075 - 20345118
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatc 161  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||    
T  20345075 caatcattctctctcatttaaataatttattttaatcattcatc 20345118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 39994220 - 39994255
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  39994220 attctctctcatctaaataatttattttaatcattc 39994255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 49279518 - 49279553
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  49279518 attctctctcatctaaataatttattttaatcattc 49279553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 47548869 - 47548926
Alignment:
Q  127 tctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||| ||||||||| ||| || | |||| |||| ||||||||    
T  47548869 tctctcatctaaataatttattttaatcatccattcaacattctctctcatctaaaat 47548926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 32832655 - 32832594
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||| |||| ||||||||    
T  32832655 attctctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaat 32832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 39729015 - 39729076
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||||||| ||||||||||||| || | |||| |||| ||||||||    
T  39729015 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 39729076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 41069735 - 41069674
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||||||| ||||||||||||| || | |||| |||| ||||||||    
T  41069735 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 41069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 8209316 - 8209359
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcat 160  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  8209316 tcaataattctctctcatcaaaataatttattttaatcattcat 8209359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 11226175 - 11226212
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||||||||| |||||||||||||    
T  11226175 attctctctcatctaaataatttattttaatcattcat 11226212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 3496840 - 3496805
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  3496840 attctctctcatctaaataatttattttaatcattc 3496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 15141909 - 15141944
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  15141909 attctctctcatctaaataatttattttaatcattc 15141944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 16401191 - 16401124
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||| ||| |||||||| ||||||||||| |||||| ||| ||||||| |||| |||| ||||||||    
T  16401191 tcaattattttctctcatgtaaataatttattttaattatttatccaccattctttctcatctaaaat 16401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 19037108 - 19037073
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  19037108 attctctctcatctaaataatttattttaatcattc 19037073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 6752132 - 6752099
Alignment:
Q  127 tctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||||| |||||||||||||    
T  6752132 tctctcatctaaataatttattttaatcattcat 6752099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 23395962 - 23395999
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  23395962 attctctatcatctaaataatttattttaatcattcat 23395999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 36562802 - 36562765
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  36562802 attctctctcatctaaataatttattttactcattcat 36562765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 457683 - 457743
Alignment:
Q  128 ctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    ||||||||||||||||||| |||||||||||||||| | |||| |||| ||||||||||||    
T  457683 ctctcatctaaataatttattttaatcattcatccatcattctctctcatctaaaatacac 457743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 6793518 - 6793588
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    |||||||| ||||||||| |||||||||| |||||||| ||||| | |||||| |||| ||||||||||||    
T  6793518 caataattatctctcatcaaaataatttattttaatcactcatctatcgttctctctcatctaaaatacac 6793588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 8585733 - 8585801
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaaatg 193  Q
    ||||| |||||||||| ||||| |||||||||||||||| | |||| | || |||||||||||| ||||    
T  8585733 tctctttcatctaaatcatttattttaatcattcatccatcattctctttcatctaaaatacactaatg 8585801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 24226082 - 24226150
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatac 186  Q
    |||||||||||| ||||| |||||||||| |||||||||||||| | | || | |||| ||||||||||    
T  24226082 caataattctctgtcatcaaaataatttattttaatcattcatctatcattttctctcatctaaaatac 24226150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 26847163 - 26847239
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaaatg 193  Q
    ||||| ||| ||||| |||||||||||||| |||| ||||||||| | | |||| |||| |||||||||||| ||||    
T  26847163 tcaattattatctcttatctaaataatttattttactcattcatctatcattctctctcatctaaaatacactaatg 26847239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 7506661 - 7506696
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  7506661 attctctctcatctaaataatttattttaatcattc 7506696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 9928290 - 9928325
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  9928290 attctctctcatctaaataatttattttaatcattc 9928325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 22469728 - 22469763
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  22469728 attctctctcatctaaataatttattttaatcattc 22469763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 28067336 - 28067379
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatc 161  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||    
T  28067336 caatcattctctctcatcaaaataatttattttaatcattcatc 28067379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 512767 - 512837
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    ||||| |||||||||||| |||||||||| |||||||| ||||| |   |||| |||| ||||||||||||    
T  512767 caatatttctctctcatcaaaataatttattttaatcactcatctattattctctctcatctaaaatacac 512837  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 6139347 - 6139381
Alignment:
Q  123 attctctctcatctaaataatttactttaatcatt 157  Q
    |||||||||||||||||||||||| ||||||||||    
T  6139347 attctctctcatctaaataatttattttaatcatt 6139381  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 3037436 - 3037396
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatcca 163  Q
    ||||||| ||||||||| |||||| ||||||||||||||||    
T  3037436 attctctttcatctaaaaaatttattttaatcattcatcca 3037396  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 30643666 - 30643614
Alignment:
Q  111 tcttagtcaataattctctctcatctaaataatttactttaatcattcatcca 163  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  30643666 tcttaatcaatcattctctctcatctaaataatttattttaatcattcatcca 30643614  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 44015470 - 44015404
Alignment:
Q  127 tctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacacaaatg 193  Q
    |||||||||||||||||||| |||||||||||||| | | |||| |||| |||||||||||| ||||    
T  44015470 tctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaaatacactaatg 44015404  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 50041881 - 50041838
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatc 161  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  50041881 caataattctctctcatcaaaataatttattttaatcattcatc 50041838  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 50049103 - 50049060
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatc 161  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  50049103 caataattctctctcatcaaaataatttattttaatcattcatc 50049060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 46079402 - 46079365
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||||||||| |||||||||||||    
T  46079402 attctctctcatctaaataatttattttaatcattcat 46079365  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 31455954 - 31455919
Alignment:
Q  125 tctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||||||| |||||||||||||    
T  31455954 tctctctcatctaaataatttattttaatcattcat 31455919  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 53176862 - 53176905
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcat 160  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||    
T  53176862 tcaatcattttctctcatctaaataatttattttaatcattcat 53176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 33913973 - 33914015
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||| |||| ||||| |||||||||||||    
T  33913973 caataattctctctcatcaaaatgatttattttaatcattcat 33914015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 36498666 - 36498596
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    ||||||||||||| |||| |||||||||| |||||||| ||||| | | | || |||| ||||||||||||    
T  36498666 caataattctctcacatcaaaataatttattttaatcactcatctatcatcctctctcatctaaaatacac 36498596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 52198372 - 52198442
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    |||||||| ||||||||| |||||||||| |||||||||| ||| | | || | |||| ||||||||||||    
T  52198372 caataattatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaatacac 52198442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 29544224 - 29544187
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcat 160  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  29544224 attctctatcatctaaataatttattttaatcattcat 29544187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 52673260 - 52673199
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||||||||||| |||||||||| |||||| |||||| || | |||| |||| ||||||||    
T  52673260 attctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaaaat 52673199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 5052111 - 5052151
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcatt 157  Q
    ||||| ||||||||||||| |||||||||| ||||||||||    
T  5052111 tcaatcattctctctcatcaaaataatttattttaatcatt 5052151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 19473105 - 19473049
Alignment:
Q  131 tcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaataca 187  Q
    |||||||||||||||| |||||||||||||  | | || | ||||||||||||||||    
T  19473105 tcatctaaataatttattttaatcattcatgtatcattttctctcctctaaaataca 19473049  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 37685248 - 37685191
Alignment:
Q  127 tctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||||||||||||||||| |||||||||||||||| | |||| |||| ||||||||    
T  37685248 tctctcatctaaataatttattttaatcattcatccaacattctctctcgtctaaaat 37685191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 42971706 - 42971643
Alignment:
Q  122 aattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaata 185  Q
    ||||||||||||||||||||||||| |||||||||||  ||| | |||| |||| |||||||||    
T  42971706 aattctctctcatctaaataatttattttaatcattcgcccaacattctctctcatctaaaata 42971643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 43368554 - 43368508
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatcca 163  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||    
T  43368554 tcaataattcattctcatctaaataatttattttaatcattcatcca 43368508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 33884105 - 33884053
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctc 175  Q
    |||||||||||||||||||||||| |||||| || |||||||| |||| ||||    
T  33884105 attctctctcatctaaataatttattttaattatccatccaccattctctctc 33884053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 42691135 - 42691095
Alignment:
Q  119 aataattctctctcatctaaataatttactttaatcattca 159  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  42691135 aataattctctctcatcaaaataatttattttaatcattca 42691095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 16876778 - 16876743
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  16876778 attctctctcatctaaataatttattttaatcattc 16876743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 18867989 - 18867954
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  18867989 attctctctcatctaaataatttattttaatcattc 18867954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 23185964 - 23185929
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  23185964 attctctctcatctaaataatttattttaatcattc 23185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 30061210 - 30061171
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcat 156  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  30061210 tcaataattttctctcatctaaataatttattttaatcat 30061171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 34328134 - 34328169
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  34328134 attctctctcatctaaataatttattttaatcattc 34328169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 40591038 - 40591105
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||| ||||||| |||||||||||||||| |||||||||| ||| | | |||||| || ||||||||    
T  40591038 tcaattattctctttcatctaaataatttattttaatcatttatctaacattctatttcatctaaaat 40591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 46425379 - 46425344
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattc 158  Q
    |||||||||||||||||||||||| |||||||||||    
T  46425379 attctctctcatctaaataatttattttaatcattc 46425344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 2628498 - 2628437
Alignment:
Q  123 attctctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    ||||||||||||||||||| |||| |||||||||| || || | |||| |||| ||||||||    
T  2628498 attctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaat 2628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 11369113 - 11369056
Alignment:
Q  127 tctctcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaat 184  Q
    |||||| ||||||||||||| |||||||||| ||||| | |||| |||| ||||||||    
T  11369113 tctctcgtctaaataatttattttaatcatttatccaacattctctctcatctaaaat 11369056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 17248761 - 17248716
Alignment:
Q  118 caataattctctctcatctaaataatttactttaatcattcatcca 163  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||||    
T  17248761 caatcattttctctaatctaaataatttaatttaatcattcatcca 17248716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 19699881 - 19699925
Alignment:
Q  117 tcaataattctctctcatctaaataatttactttaatcattcatc 161  Q
    ||||||||  ||||||||| |||||||||| ||||||||||||||    
T  19699881 tcaataatattctctcatcaaaataatttattttaatcattcatc 19699925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 20318 - 20351
Alignment:
Q  127 tctctcatctaaataatttactttaatcattcat 160  Q
    |||||||||||||||||||| |||||||||||||    
T  20318 tctctcatctaaataatttattttaatcattcat 20351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 31608 - 31665
Alignment:
Q  131 tcatctaaataatttactttaatcattcatccaccgttctatctcctctaaaatacac 188  Q
    |||||||||||||||| |||||||||||||| |   |||| |||| ||||||||||||    
T  31608 tcatctaaataatttattttaatcattcatctattattctctctcgtctaaaatacac 31665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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