View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_311 (Length: 229)

Name: NF9917A_low_311
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_311
NF9917A_low_311
[»] chr4 (2 HSPs)
chr4 (7-229)||(11592595-11592817)
chr4 (7-229)||(11645302-11645524)
[»] chr1 (1 HSPs)
chr1 (7-225)||(37180796-37181012)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 11592817 - 11592595
Alignment:
Q  7 gtaacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592817 gtaacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatt 11592718  T
Q  107 agaaaaagggtaagagatgggacaaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatg 206  Q
    |||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11592717 agaaaaaggcaaagaaatgggacaaacgtttaaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatg 11592618  T
Q  207 gagagagttgaatcattgatgag 229  Q
    |||||||||||||||||||||||    
T  11592617 gagagagttgaatcattgatgag 11592595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 11645302 - 11645524
Alignment:
Q  7 gtaacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11645302 gtaacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatt 11645401  T
Q  107 agaaaaagggtaagagatgggacaaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatg 206  Q
    |||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11645402 agaaaaaggcaaagaaatgggacaaacgtttaaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatg 11645501  T
Q  207 gagagagttgaatcattgatgag 229  Q
    |||||||||||||||||||||||    
T  11645502 gagagagttgaatcattgatgag 11645524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 37180796 - 37181012
Alignment:
Q  7 gtaacaatgttgttgatgcagttgataatgctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcatt 106  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  37180796 gtaacaatgttgttgatgcagttgataatgttaaagagaaagtttatgataaagctaatgatgtttatgataatgttcaagattccacaaaagggtcatt 37180895  T
Q  107 agaaaaagg-gtaagagatgggacaaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaat 205  Q
     ||||||||   || | ||||||||||| || ||||||||||||| |   |||||||||||  |  |||||||||| ||||||||| |||||||||| ||    
T  37180896 ggaaaaaggaaaaaaaaatgggacaaacattgaaggaacatgttggt---aacgtgaccgagacataagacggtgtaaagaagtttgtgtcattatctat 37180992  T
Q  206 ggagagagttgaatcattga 225  Q
    ||||||||||||||||||||    
T  37180993 ggagagagttgaatcattga 37181012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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