View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_322 (Length: 227)
Name: NF9917A_low_322
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_322 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48592487 - 48592261
Alignment:
| Q |
1 |
ttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592487 |
ttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttc |
48592388 |
T |
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| Q |
101 |
gaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592387 |
gaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
48592288 |
T |
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| Q |
201 |
agttgcatcatcataggcaactacgtt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48592287 |
agttgcatcatcataggcaactacgtt |
48592261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48602182 - 48601956
Alignment:
| Q |
1 |
ttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602182 |
ttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttc |
48602083 |
T |
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| Q |
101 |
gaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
200 |
Q |
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| T |
48602082 |
gaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
48601983 |
T |
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| Q |
201 |
agttgcatcatcataggcaactacgtt |
227 |
Q |
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| T |
48601982 |
agttgcatcatcataggcaactacgtt |
48601956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23231845 - 23232071
Alignment:
| Q |
1 |
ttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
23231845 |
ttgttggaaagctttatcaaagcttgtgtgaggttcaaactttctctggccttagatttatttgtcaatgtttgaatgaattcatcgagttcttgggttc |
23231944 |
T |
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| Q |
101 |
gaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
200 |
Q |
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|||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231945 |
gaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
23232044 |
T |
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| Q |
201 |
agttgcatcatcataggcaactacgtt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23232045 |
agttgcatcatcataggcaactacgtt |
23232071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23224512 - 23224733
Alignment:
| Q |
1 |
ttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttc |
100 |
Q |
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|||||||||||||| | ||||||||| ||||||||||| |||||||| ||||| || |||||| |||||||||||||||| || | ||||||| | |||| |
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| T |
23224512 |
ttgttggaaagcttcaacaaagcttgagtgaggttcacgctttcttcaaccttggatttattttccaaagtttgaatgaactcgttgagttctcgagttc |
23224611 |
T |
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| Q |
101 |
gaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaa |
200 |
Q |
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|||| |||| |||||| | || || || || || ||||||||| ||| || |||||||| || ||||||||||| | ||||||||| || |||||||| |
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| T |
23224612 |
gaattggtaagaattgtccaatagtccggttgcctaagagctcaaaggtactaagctttttgatgaatttccaatatgccccataaggggcaaaagcaaa |
23224711 |
T |
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| Q |
201 |
agttgcatcatcataggcaact |
222 |
Q |
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||| |||||||| ||| ||||| |
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| T |
23224712 |
agtagcatcatcgtagacaact |
23224733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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